Leptinotarsa decemlineata genome annotations v0.5.3
The Leptinotarsa decemlineata genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. This dataset presents the Leptinotarsa decemlineata gene set BCM_v_0.5.3, which was generated computationally. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Leptinotarsa decemlineata genome assembly 1.0. Further annotation method details will be available in a forthcoming publication.
NOTE: This gene set is an unstable pre-release (v0.5.3), and was provided to facilitate manual curation and analyses before the official gene set is released. Gene identifiers from this gene set will likely not be maintained.
If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use: https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use
Resources in this dataset:
Resource Title: Leptinotarsa decemlineata genome annotations v0.5.3 for genome assembly v1.0.
File Name: Ldec_genome_annotations_BCM_version_0.5.3.tar.gz
The attached tar.gz archive (Ldec_genome_annotations_BCM_version_0.5.3.tar.gz) contains the following files:
LDEC.Analysis.gff3.gz. This file contains evidence gff3 format underlying the final gene predictions.
LDEC.CDS.fna.gz. CDS sequences of Leptinotarsa decemlineata genome annotations v0.5.3.
LDEC.faa.gz Amino acid sequences of Leptinotarsa decemlineata genome annotations v0.5.3.
LDEC.fna.gz cDNA sequences of Leptinotarsa decemlineata genome annotations v0.5.3.
LDEC.Models.gff3.gz Gff3 of all gene predictions of Leptinotarsa decemlineata genome annotations v0.5.3, modified by the National Agricultural Library to be compliant with gff3 specifications.
Data contact nameSchoville, Sean
Data contact firstname.lastname@example.org
PublisherAg Data Commons
- Not specified
Geographic location - descriptionLong Island
ISO Topic Category
Ag Data Commons Group
- Insects - i5K
National Agricultural Library Thesaurus termsgenomics; Leptinotarsa decemlineata; data collection; genes; genome assembly; prediction; complementary DNA; nucleotide sequences
OMB Bureau Code
- 005:18 - Agricultural Research Service
OMB Program Code
- 005:040 - National Research
Public Access Level