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lepdec_OGSv1-2.tar.gz (16.98 MB)

Leptinotarsa decemlineata Official Gene set v1.2

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Version 2 2024-02-16, 12:39
Version 1 2024-02-08, 18:48
posted on 2024-02-16, 12:39 authored by Sean Schoville, Yolanda Chen, Monica Poelchau, Daniel S.T. Hughes, Hugh M. Robertson, Joshua B. Benoit, Andrew J. Rosendale, Jeffery W. Jones, Subba R. Palli, Abhishek Kumar, Victor-Manuel Ruiz-Arroyo, Anna Childers, Julia Bowsher, Kaat Cappelle, Justin Clements, Patamarerk Engsontia, Inmaculada García-Robles, Alessandro Grapputo, Emily C. Jennings, Iris M. Vargas Jentzsch, Megha Kalsi, Fei Li, Marcé D. Lorenzen, Xingzhou Ma, Alexander Martynov, Nicholas Miller, Robert F. Mitchell, Monica Munoz-Torres, Kristen A. Panfilio, Yannick Pauchet, Marko Petek, Joseph P. Rinehart, Elise M. Szuter, Alex Torson, Ashley Yates, George D. Yocum, Martin Andersson, Sher Khan, Stephen Richards

The Leptinotarsa decemlineata genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The L. decemlineata research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.2. OGSv1.1 is an integration of automatic gene predictions from Maker (performed by Dan Hughes at Baylor College of Medicine) with manual annotations by the research community (done via the Apollo manual annotation software). The coordinates of OGSv1.1 were converted to the latest genome assembly, GCF_000500325.1, using coordinates_conversion and remap-gff3, to generate OGSv1.2.

If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use:

Resources in this dataset:

  • Resource Title: Leptinotarsa decemlineata Official Gene Set OGSv1.2.

    File Name: lepdec_OGSv1-2.tar.gz

    Resource Description: The attached tar.gz archive (lepdec_OGSv1-2.tar.gz) contains the following files: * lepdec_OGSv1.2_GCF_000500325.1_cds.fa - CDS sequences for OGSv1.2 * lepdec_OGSv1.2_GCF_000500325.1_pep.fa - protein sequences for OGSv1.2 * lepdec_OGSv1.2_GCF_000500325.1_trans.fa - transcript sequences for OGSv1.2 * lepdec_OGSv1.2_GCF_000500325.1.gff3 - GFF3 file for OGSv1.2 * lepdec_OGSv1.2_GCF_000500325.1_removed-features.tsv - a list of features removed between OGSv1.1 and OGSv1.2. The list includes feature type, ID, Name, and owner. * lepdec_OGSv1.2_GCF_000500325.1_update-summary.tsv - summary statistics of the features removed between OGSv1.1 and OGSv1.2


National Human Genome Research Institute: U54 HG003273


Data contact name

Schoville, Sean

Data contact email


Ag Data Commons

Temporal Extent Start Date



  • Not specified

Geographic Coverage


ISO Topic Category

  • biota

Ag Data Commons Group

  • Insects - i5K

National Agricultural Library Thesaurus terms

genomics; Leptinotarsa decemlineata; genes; prediction

OMB Bureau Code

  • 005:18 - Agricultural Research Service

OMB Program Code

  • 005:040 - National Research

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Schoville, Sean; Chen, Yolanda; Poelchau, Monica; Hughes, Daniel S.T.; Robertson, Hugh M.; Benoit, Joshua B.; Rosendale, Andrew J.; Jones, Jeffery W.; Palli, Subba R.; Kumar, Abhishek; Ruiz-Arroyo, Victor-Manuel; Childers, Anna; Bowsher, Julia; Cappelle, Kaat; Clements, Justin; Engsontia, Patamarerk; García-Robles, Inmaculada; Grapputo, Alessandro; Jennings, Emily C.; Vargas Jentzsch, Iris M.; Kalsi, Megha; Li, Fei; Lorenzen, Marcé D.; Ma, Xingzhou; Martynov, Alexander; Miller, Nicholas; Mitchell, Robert F.; Munoz-Torres, Monica; Panfilio, Kristen A.; Pauchet, Yannick; Petek, Marko; Rinehart, Joseph P.; Szuter, Elise M.; Torson, Alex; Yates, Ashley; Yocum, George D.; Andersson, Martin; Khan, Sher; Richards, Stephen (2018). Leptinotarsa decemlineata Official Gene set v1.2. Ag Data Commons.

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