Leptinotarsa decemlineata Official Gene set v1.2
The Leptinotarsa decemlineata genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The L. decemlineata research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.2. OGSv1.1 is an integration of automatic gene predictions from Maker (performed by Dan Hughes at Baylor College of Medicine) with manual annotations by the research community (done via the Apollo manual annotation software). The coordinates of OGSv1.1 were converted to the latest genome assembly, GCF_000500325.1, using coordinates_conversion and remap-gff3, to generate OGSv1.2.
If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use: https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use
Resources in this dataset:
Resource Title: Leptinotarsa decemlineata Official Gene Set OGSv1.2.
File Name: lepdec_OGSv1-2.tar.gz
Resource Description: The attached tar.gz archive (lepdec_OGSv1-2.tar.gz) contains the following files: * lepdec_OGSv1.2_GCF_000500325.1_cds.fa - CDS sequences for OGSv1.2 * lepdec_OGSv1.2_GCF_000500325.1_pep.fa - protein sequences for OGSv1.2 * lepdec_OGSv1.2_GCF_000500325.1_trans.fa - transcript sequences for OGSv1.2 * lepdec_OGSv1.2_GCF_000500325.1.gff3 - GFF3 file for OGSv1.2 * lepdec_OGSv1.2_GCF_000500325.1_removed-features.tsv - a list of features removed between OGSv1.1 and OGSv1.2. The list includes feature type, ID, Name, and owner. * lepdec_OGSv1.2_GCF_000500325.1_update-summary.tsv - summary statistics of the features removed between OGSv1.1 and OGSv1.2
Funding
National Human Genome Research Institute: U54 HG003273
History
Data contact name
Schoville, SeanData contact email
sean.schoville@wisc.eduPublisher
Ag Data CommonsTemporal Extent Start Date
2018-01-01Theme
- Not specified
Geographic Coverage
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- biota
Ag Data Commons Group
- Insects - i5K
National Agricultural Library Thesaurus terms
genomics; Leptinotarsa decemlineata; genes; predictionOMB Bureau Code
- 005:18 - Agricultural Research Service
OMB Program Code
- 005:040 - National Research
Pending citation
- No
Public Access Level
- Public