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Ladona fulva manual annotations on genome assembly Lful_1.0

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posted on 2024-02-15, 22:46 authored by Panagiotis Provataris, Seung-Joon Ahn, Ryo Futahashi, Jeffery Jones, Oliver Niehuis, Hugh M. Robertson, Agnes Southgate

This dataset presents manual annotations of Ladona fulva genome annotations v0.5.3 and genome assembly v1.0. Manual annotations were performed by individual annotators in the Apollo software at the i5k Workspace@NAL, and QC'd via the GFF3toolkit software, NCBI's table2asn_GFF software (https://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/table2asn_GFF/), and manual inspection. Manual annotations are presented here on the original coordinate system of genome assembly v1.0.


Resources in this dataset:

  • Resource Title: Ladona fulva manual annotations on genome assembly Lful_1.0.

    File Name: ladful_manual_annotations.tar.gz

    Resource Description: This directory contains the following files: - ladful_manual_annotations_cds.fa: CDS sequences of the Ladona fulva manual annotations. - ladful_manual_annotations.gff: GFF3 file of the Ladona fulva manual annotations. - ladful_manual_annotations_pep.fa: Protein sequences of the Ladona fulva manual annotations. - ladful_manual_annotations_trans.fa: RNA sequences of the Ladona fulva manual annotations.

Funding

National Human Genome Research Institute: U54 HG003273

History

Data contact name

Poelchau, Monica

Data contact email

monica.poelchau@usda.gov

Publisher

Ag Data Commons

Temporal Extent Start Date

2011-05-07

Theme

  • Not specified

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[49.66667,7.5]},"type":"Feature","properties":{}}]}

Geographic location - description

Rheinland-Pfalz, Germany

ISO Topic Category

  • biota

Ag Data Commons Group

  • Insects - i5K

National Agricultural Library Thesaurus terms

genomics; Ephemera danica; genome assembly; genome

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Provataris, Panagiotis; Ahn, Seung-Joon; Futahashi, Ryo; Jones, Jeffery; Niehuis, Oliver; Robertson, Hugh M.; Southgate, Agnes (2021). Ladona fulva manual annotations on genome assembly Lful_1.0. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1520870

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    Categories

    Keywords

    genome annotationLadona fulva

    Licence

    CC BY-SA 4.0

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