posted on 2024-02-15, 22:46authored byPanagiotis Provataris, Seung-Joon Ahn, Ryo Futahashi, Jeffery Jones, Oliver Niehuis, Hugh M. Robertson, Agnes Southgate
<p>This dataset presents manual annotations of <a href="https://10.15482/USDA.ADC/1503790">Ladona fulva genome annotations v0.5.3</a> and <a href="https://10.15482/USDA.ADC/1503789">genome assembly v1.0</a>. Manual annotations were performed by individual annotators in the <a href="http://genomearchitect.org/">Apollo software</a> at the i5k Workspace@NAL, and QC'd via the <a href="https://github.com/NAL-i5K/gff3toolkit">GFF3toolkit software</a>, NCBI's table2asn_GFF software (<a href="https://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/table2asn_GFF/">https://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/table2asn_GFF/</a>), and manual inspection. Manual annotations are presented here on the original coordinate system of genome assembly v1.0.</p>
<div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Ladona fulva manual annotations on genome assembly Lful_1.0.</p> <p>File Name: ladful_manual_annotations.tar.gz</p><p>Resource Description: This directory contains the following files:
- ladful_manual_annotations_cds.fa: CDS sequences of the Ladona fulva manual annotations.
- ladful_manual_annotations.gff: GFF3 file of the Ladona fulva manual annotations.
- ladful_manual_annotations_pep.fa: Protein sequences of the Ladona fulva manual annotations.
- ladful_manual_annotations_trans.fa: RNA sequences of the Ladona fulva manual annotations.
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Funding
National Human Genome Research Institute: U54 HG003273