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Ladona fulva manual annotations on genome assembly Lful_1.0

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posted on 2024-02-15, 22:46 authored by Panagiotis Provataris, Seung-Joon Ahn, Ryo Futahashi, Jeffery Jones, Oliver Niehuis, Hugh M. Robertson, Agnes Southgate
<p>This dataset presents manual annotations of <a href="https://10.15482/USDA.ADC/1503790">Ladona fulva genome annotations v0.5.3</a> and <a href="https://10.15482/USDA.ADC/1503789">genome assembly v1.0</a>. Manual annotations were performed by individual annotators in the <a href="http://genomearchitect.org/">Apollo software</a> at the i5k Workspace@NAL, and QC'd via the <a href="https://github.com/NAL-i5K/gff3toolkit">GFF3toolkit software</a>, NCBI's table2asn_GFF software (<a href="https://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/table2asn_GFF/">https://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/table2asn_GFF/</a>), and manual inspection. Manual annotations are presented here on the original coordinate system of genome assembly v1.0.</p> <div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Ladona fulva manual annotations on genome assembly Lful_1.0.</p> <p>File Name: ladful_manual_annotations.tar.gz</p><p>Resource Description: This directory contains the following files: - ladful_manual_annotations_cds.fa: CDS sequences of the Ladona fulva manual annotations. - ladful_manual_annotations.gff: GFF3 file of the Ladona fulva manual annotations. - ladful_manual_annotations_pep.fa: Protein sequences of the Ladona fulva manual annotations. - ladful_manual_annotations_trans.fa: RNA sequences of the Ladona fulva manual annotations. </p></li></ul>

Funding

National Human Genome Research Institute: U54 HG003273

History

Related Materials

  1. 1.
    URL - Is supplemented by Ladona fulva genome assembly v1.0
  2. 2.
  3. 3.
    URL - Is supplemented by Generic sample from Ladona fulva
  4. 4.
    URL - Is compiled by Apollo software
  5. 5.
    URL - Is compiled by GFF3toolkit software
  6. 6.
    URL - Is compiled by table2asn_GFF

Data contact name

Poelchau, Monica

Data contact email

monica.poelchau@usda.gov

Publisher

Ag Data Commons

Temporal Extent Start Date

2011-05-07

Theme

  • Not specified

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[49.66667,7.5]},"type":"Feature","properties":{}}]}

Geographic location - description

Rheinland-Pfalz, Germany

ISO Topic Category

  • biota

Ag Data Commons Group

  • Insects - i5K

National Agricultural Library Thesaurus terms

genomics; Ephemera danica; genome assembly; genome

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Provataris, Panagiotis; Ahn, Seung-Joon; Futahashi, Ryo; Jones, Jeffery; Niehuis, Oliver; Robertson, Hugh M.; Southgate, Agnes (2021). Ladona fulva manual annotations on genome assembly Lful_1.0. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1520870

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