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Immigration and cyclical bottlenecks: High inbreeding despite high genetic diversity in an oscillating population of the biting midge, Culicoides sonorensis (Diptera: Ceratopogonidae)

dataset
posted on 2023-11-30, 12:15 authored by Phillip ShultsPhillip Shults

These data represent the microsatellite peak calls generated after genotyping the specimens, as well as, the outputs from downstream analyses and the metadata used to construct some of the figures and tables. The microsatellite data can be found in "Shults_2023_peak_calls.xlsx" and contains the identity of each peak scored scored using Geneious v.9.1 software. An "x" represents no peak call at that marker for that individual. These data were used as input for all of the subsequent population genetic analyses. All of the data used to create the tables and figures of the manuscript can be found in "Shults_2023_tables_figs.xlsx".

Resources in this dataset:

  • Resource Title: Microsatellite peak calls File Name: Shults_2023_peak_calls.xlsx Resource Description: Contained in this file are all of the individual specimens (rows) genotype during this project. An "x" represents an uncalled peak for that specific marker.

  • Resource Title: Tables and Figures File Name: Shults_2023_tables_figs.xlsx Resource Description: Contained in this file are all of the metadata used to create the tales and figures from the manuscript. Each tab is labeled with the corresponding information and IBT stands for isolation by time.

Funding

Agricultural Research Service, Non-Assistance Cooperative Agreement: 58-3020-9-007

History

Data contact name

Shults, Phillip

Data contact email

phillip.shults@usda.gov

Publisher

Ag Data Commons

Temporal Extent Start Date

2018-04-23

Temporal Extent End Date

2021-03-22

Theme

  • Not specified

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"Polygon","coordinates":[[[-117.7473449707,33.861114931205],[-117.7473449707,34.182092230007],[-117.05795288086,34.182092230007],[-117.05795288086,33.861114931205],[-117.7473449707,33.861114931205]]]},"type":"Feature","properties":{}}]}

ISO Topic Category

  • environment

National Agricultural Library Thesaurus terms

immigration; inbreeding; genetic variation; Culicoides sonorensis; microsatellite repeats; genotyping; genetic analysis; population genetics

OMB Bureau Code

  • 005:18 - Agricultural Research Service

OMB Program Code

  • 005:040 - National Research

ARS National Program Number

  • 104

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Shults, Phillip T. (2023). Immigration and cyclical bottlenecks: High inbreeding despite high genetic diversity in an oscillating population of the biting midge, Culicoides sonorensis (Diptera: Ceratopogonidae). Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1528959

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