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Image data of growth of Valencia sweet orange nonembryogenic cells on predicted points from a 5-factor response surface design

dataset
posted on 2024-09-11, 21:02 authored by Randall NiedzRandall Niedz, Eldridge Wynn

The data are images of tissue cultures of Valencia sweet orange nonembryogenic callus cells taken in 2006 at the U.S. Horticultural Research Laboratory, Ft. Pierce, Florida, USA to photo document treatments from an experiment designed to determine how well a model developed from a 5-factor response surface methodology (RSM) design predicted callus growth. Growth predictions for thirteen formulations are listed in the spreadsheet file 5 factor RSM Design_Predicted.xlsx. Six culture dishes were used to estimate growth for each formulation. A culture dish representative of the growth of each formulation was photographed. Each image is named to match the formulation. For example, the jpg image labeled 5-factor RSM_MS prediction 21.JPG is an image of the callus grown on MS formulation #21. This dataset includes 15 files – 14 image files and 1 Excel spreadsheet. Images were captured in JPEG (EXIF 2.2) format with a Nikon Coolpix 5400 digital camera equipped with a 1/1.8” (7.2 x 5.3 mm) CCD sensor at a resolution of 2592 x 1944 pixels. Each image is of a single culture plate with the top lid removed and photographed under cool white, fluorescent lighting.

The experimental setup for the 5-factor response surface design is described in - Niedz, R. P. and T. J. Evens (2007). "Regulating plant tissue growth by mineral nutrition." In Vitro Cellular & Developmental Biology - Plant 43(4): 370-381.

Funding

USDA-ARS: 6034-21000-020-000D

History

Data contact name

Niedz, Randall, P.

Data contact email

randall.niedz@usda.gov

Publisher

Ag Data Commons

Intended use

The images originated from a multivariate DOE design, specifically a prediction model from a 5-factor D-optimal response surface design with quadratic resolution. While the published data includes fresh tissue weight, these images were collected at all treatment points and can be utilized for image analysis research. The fresh tissue weight data would serve as the "ground truth" to develop and compare various image processing algorithms and methods.

Use limitations

Six culture plates were used to estimate the growth at each treatment point. However, a single image was taken of a plate selected at each treatment point that was representative of the growth at that point - analogous to an average plate.

Temporal Extent Start Date

2006-03-13

Temporal Extent End Date

2006-03-13

Frequency

  • notPlanned

Theme

  • Non-geospatial

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[-80.40894921548845,27.427967681168788]},"type":"Feature","properties":{}}]}

Geographic location - description

The images were taken at the U.S. Horticultural Research Laboratory, 2001 S Rock Rd, Fort Pierce, FL 34945. 27.427967681168788, -80.40894921548845 Ft Pierce, Florida, USA

ISO Topic Category

  • biota
  • farming

National Agricultural Library Thesaurus terms

oranges; nutrient requirements; models; cell growth; plant tissues; culture dishes; tissue weight; image analysis

OMB Bureau Code

  • 005:18 - Agricultural Research Service

OMB Program Code

  • 005:040 - National Research

ARS National Program Number

  • 301

ARIS Log Number

205736

Primary article PubAg Handle

Pending citation

  • No

Public Access Level

  • Public