Image data of growth of Valencia sweet orange nonembryogenic cells on points from a 5-factor response surface design to determine the effects of mineral nutrition on growth
The data are images of tissue cultures of Valencia sweet orange nonembryogenic callus cells taken in 2006 at the U.S. Horticultural Research Laboratory, Ft. Pierce, Florida, USA to photo document treatments from an experiment designed to determine the effects of mineral nutrition on callus growth using a 5-factor response surface methodology (RSM) design. The design matrix is presented in the spreadsheet file 5 factor RSM Design_11-28-2005.xlsx. The design included 46 runs divided into 3 blocks. Six culture dishes were used to estimate the response for each run. A culture dish representative of the run was photographed. Each image is named to match the run of the design. For example, the jpg image labeled Run 04_Blk1_5F RSM_NE_Valencia_11-28-2005.JPG is an image of the callus grown on Run #4 that was part of Block 1 of the 5-factor RSM design for the nonembryogenic Valencia sweet orange callus cells. This dataset includes 47 files – 46 image files and 1 Excel spreadsheet. Images were captured in JPEG (EXIF 2.2) format with a Nikon Coolpix 5400 digital camera equipped with a 1/1.8” (7.2 x 5.3 mm) CCD sensor at a resolution of 2592 x 1944 pixels. Each image is of a single culture plate with the top lid removed and photographed under cool white, fluorescent lighting.
The experimental setup for the 5-factor response surface design is described in - Niedz, R. P. and T. J. Evens (2007). "Regulating plant tissue growth by mineral nutrition." In Vitro Cellular & Developmental Biology - Plant 43(4): 370-381.
Funding
USDA-ARS: 6034-21000-020-000D
History
Data contact name
Niedz, Randall, P.Data contact email
randall.niedz@usda.govPublisher
Ag Data CommonsIntended use
The images originated from a multivariate DOE design, specifically a 5-factor D-optimal response surface design with quadratic resolution. While the published data includes fresh tissue weight, these images were collected at all treatment points and can be utilized for image analysis research. The fresh tissue weight data would serve as the "ground truth" to develop and compare various image processing algorithms and methods.Use limitations
Six culture plates were used to estimate the growth at each treatment point. However, a single image was taken of a plate selected at each treatment point that was representative of the growth at that point - analogous to an average plate.Temporal Extent Start Date
2006-01-09Temporal Extent End Date
2006-02-06Frequency
- notPlanned
Theme
- Non-geospatial
Geographic Coverage
{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[-80.40894921548845,27.427967681168788]},"type":"Feature","properties":{}}]}Geographic location - description
The images were taken at the U.S. Horticultural Research Laboratory, 2001 S Rock Rd, Fort Pierce, FL 34945. 27.427967681168788, -80.40894921548845 Ft Pierce, Florida, USAISO Topic Category
- biota
- farming
National Agricultural Library Thesaurus terms
oranges; nutrient requirements; models; cell growth; plant tissues; culture dishes; tissue weight; image analysisOMB Bureau Code
- 005:18 - Agricultural Research Service
OMB Program Code
- 005:040 - National Research
ARS National Program Number
- 301
ARIS Log Number
205736Primary article PubAg Handle
Pending citation
- No
Public Access Level
- Public