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47 files

Image data of growth of Valencia sweet orange nonembryogenic cells on points from a 5-factor response surface design to determine the effects of mineral nutrition on growth

dataset
posted on 2024-09-11, 20:57 authored by Randall NiedzRandall Niedz, Eldridge Wynn

The data are images of tissue cultures of Valencia sweet orange nonembryogenic callus cells taken in 2006 at the U.S. Horticultural Research Laboratory, Ft. Pierce, Florida, USA to photo document treatments from an experiment designed to determine the effects of mineral nutrition on callus growth using a 5-factor response surface methodology (RSM) design. The design matrix is presented in the spreadsheet file 5 factor RSM Design_11-28-2005.xlsx. The design included 46 runs divided into 3 blocks. Six culture dishes were used to estimate the response for each run. A culture dish representative of the run was photographed. Each image is named to match the run of the design. For example, the jpg image labeled Run 04_Blk1_5F RSM_NE_Valencia_11-28-2005.JPG is an image of the callus grown on Run #4 that was part of Block 1 of the 5-factor RSM design for the nonembryogenic Valencia sweet orange callus cells. This dataset includes 47 files – 46 image files and 1 Excel spreadsheet. Images were captured in JPEG (EXIF 2.2) format with a Nikon Coolpix 5400 digital camera equipped with a 1/1.8” (7.2 x 5.3 mm) CCD sensor at a resolution of 2592 x 1944 pixels. Each image is of a single culture plate with the top lid removed and photographed under cool white, fluorescent lighting.

The experimental setup for the 5-factor response surface design is described in - Niedz, R. P. and T. J. Evens (2007). "Regulating plant tissue growth by mineral nutrition." In Vitro Cellular & Developmental Biology - Plant 43(4): 370-381.

Funding

USDA-ARS: 6034-21000-020-000D

History

Data contact name

Niedz, Randall, P.

Data contact email

randall.niedz@usda.gov

Publisher

Ag Data Commons

Intended use

The images originated from a multivariate DOE design, specifically a 5-factor D-optimal response surface design with quadratic resolution. While the published data includes fresh tissue weight, these images were collected at all treatment points and can be utilized for image analysis research. The fresh tissue weight data would serve as the "ground truth" to develop and compare various image processing algorithms and methods.

Use limitations

Six culture plates were used to estimate the growth at each treatment point. However, a single image was taken of a plate selected at each treatment point that was representative of the growth at that point - analogous to an average plate.

Temporal Extent Start Date

2006-01-09

Temporal Extent End Date

2006-02-06

Frequency

  • notPlanned

Theme

  • Non-geospatial

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[-80.40894921548845,27.427967681168788]},"type":"Feature","properties":{}}]}

Geographic location - description

The images were taken at the U.S. Horticultural Research Laboratory, 2001 S Rock Rd, Fort Pierce, FL 34945. 27.427967681168788, -80.40894921548845 Ft Pierce, Florida, USA

ISO Topic Category

  • biota
  • farming

National Agricultural Library Thesaurus terms

oranges; nutrient requirements; models; cell growth; plant tissues; culture dishes; tissue weight; image analysis

OMB Bureau Code

  • 005:18 - Agricultural Research Service

OMB Program Code

  • 005:040 - National Research

ARS National Program Number

  • 301

ARIS Log Number

205736

Primary article PubAg Handle

Pending citation

  • No

Public Access Level

  • Public