Hyalella azteca Official Gene Set v1.0
The Hyalella azteca genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The Hyalella azteca research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.0. The OGS is an integration of automatic gene predictions from Maker with manual annotations by the research community (via the Apollo manual annotation software).
If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use: https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use
Resources in this dataset:
Resource Title: Hyalella azteca Official Gene Set OGSv1.0.
File Name: hyaazt_OGS_v1-0.tar.gz
Resource Description:
The attached tar.gz archive (hyaazt_OGS_v1-0.tar.gz) contains the following files:
hyaazt_OGSv1.0_cds.fa. CDS sequences of Hyalella azteca genome annotations OGSv1.0.
hyaazt_OGSv1.0_pep.fa. Amino acid sequences of Hyalella azteca genome annotations OGSv1.0.
hyaazt_OGSv1.0_trans.fa. cDNA sequences of Hyalella azteca genome annotations OGSv1.0.
hyaazt_OGSv1.0.gff. Gff3 of all gene predictions of Hyalella azteca genome annotations OGSv1.0
hyaazt_Manual2OGSv1.0_id_mapping.txt. A mapping file describing ID and name updates from dataset Hyalella azteca genome annotations v0.5.3.
readme.txt. This file briefly describes how the dataset Hyalella azteca Official Gene Set OGSv1.0 was generated.
Funding
National Human Genome Research Institute: U54 HG003273
National Science Foundation: CBET-1437409
History
Data contact name
Poynton, HelenData contact email
Helen.Poynton@umb.eduPublisher
Ag Data CommonsTheme
- Not specified
ISO Topic Category
- biota
Ag Data Commons Group
- Insects - i5K
National Agricultural Library Thesaurus terms
genomics; genes; nucleotide sequences; sequence analysisOMB Bureau Code
- 005:18 - Agricultural Research Service
OMB Program Code
- 005:040 - National Research
Pending citation
- No
Public Access Level
- Public