Halyomorpha halys Official Gene Set v1.2

<p>This dataset presents the <em>Halyomorpha halys</em> Official Gene Set (OGS) v1.2. OGSv1.2 is an update of <em>Halyomorpha halys</em> OGSv1.1 (<a href="https://doi.org/10.15482/USDA.ADC/1504240">https://doi.org/10.15482/USDA.ADC/1504240</a>) to the coordinates of genome assembly GCA_000696795.3 (<a href="https://www.ncbi.nlm.nih.gov/assembly/GCA_000696795.3">https://www.ncbi.nlm.nih.gov/assembly/GCA_000696795.3</a>) using <a href="https://github.com/NAL-i5K/coordinates_conversion/">https://github.com/NAL-i5K/coordinates_conversion/</a>. </p> <p>The original OGSv1.0 is an integration of automatic gene predictions from NCBI's eukaryotic annotation pipeline, NCBI Halyomorpha halys Annotation Release 100 (<a href="https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Halyomorpha_halys/100/">https://www.ncbi.nlm.nih.gov/genome/annotation_euk/Halyomorpha_halys/100/</a>; ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/696/795/GCF_000696795.1_Hhal_1.0), with manual annotations by the research community (performed via the Apollo manual curation software, <a href="http://genomearchitect.org/">http://genomearchitect.org/</a>). Manual annotations performed by the community were downloaded from Apollo, QC'd, and merged with NCBI Halyomorpha halys Annotation Release 100 using the GFF3toolkit software (<a href="https://github.com/NAL-i5K/GFF3toolkit/releases/tag/v1.4.4">https://github.com/NAL-i5K/GFF3toolkit/releases/tag/v1.4.4</a>). The resulting merged dataset was formatted for ingest into the i5k Workspace and GenBank databases, resulting in <em>Halyomorpha halys</em> Official Gene Set (OGS) v1.0. </p> <p>Halyomorpha Official Gene Set halhal_OGSv1.1 is a minor update of halhal_OGSv1.0: Alias attributes were added to all manually annotated cathepsin models; six models from contaminated scaffolds were removed; and notes were added to 3 models located on possibly contaminated scaffolds. </p><div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Halymorpha halys Official Gene Set OGSv1.2.</p> <p>File Name: halhal_OGSv1.2.tar.gz</p><p>Resource Description: The attached tar.gz archive (halhal_OGSv1.2.tar.gz) contains the following files:</p> <p>halhal_OGSv1.2.gff. Gff3 of all gene predictions of Halymorpha halys genome annotations OGSv1.2 halhal_OGSv1.2_CDS.fa. CDS sequences of Halymorpha halys genome annotations OGSv1.2 halhal_OGSv1.2_pep.fa. Amino acid sequences of Halymorpha halys genome annotations OGSv1.2 halhal_OGSv1.2_trans.fa. Transcript sequences of Halymorpha halys genome annotations OGSv1.2 readme. Readme file describing Halymorpha halys genome annotations OGSv1.2</p> <p></p></li></ul><p></p>