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Growth phase-dependent activation of the DccRS regulon of Campylobacter jejuni

dataset
posted on 2024-06-11, 05:09 authored by PSM, USDA ARS
Two-component systems are widespread prokaryotic signal transduction devices which allow the regulation of cellular functions in response to changing environmental conditions. The two-component system DccRS (Cj1223-Cj1222) of Campylobacter jejuni is important for the colonization of chickens. Here we dissected the DccRS system in more detail and provide evidence that the sensor DccS selectively phosphorylates the cognate effector DccR. Microarray expression profiling, real-time RT-PCR, EMSA, and primer extension analyses revealed that the DccRS regulon of strain 81116 consists of five promoter elements all containing the consensus direct repeat sequence WTTCAC-N6-TTCACW covering the putative -35 promoter regions. One of these promoters is located in front of an operon encoding a putative macrolide efflux pump while the others are in front of genes coding for putative periplasmic or membrane proteins. The DccRS regulated genes in C. jejuni strain 81116 are needed to enhance early in vivo growth of C. jejuni in 7-day old chicken. The DccRS system is activated in the late stationary bacterial growth phase, probably via the release of metabolic products. Whole genome mRNA profiling and real-time RT-PCR analysis under these conditions demonstrated that the system has no influence on the transcription of genes outside the DccRS regulon. Overall design: Two-condition experiment, C. jejuni strain WT81116 vs. C. jejuni strain 81116dccR::cm. Technical replicates: 3 WT81116, 3 81116dccR::cm, independently grown to stationary phase and harvested. One replicate per array. A type 2 gene expression experimental design was used, with fluorescently labeled genomic DNA as a reference channel in each experiment as described by Lucchini, S., et al. 2005. Infect Immun 73:88-102.

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2010-01-08

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

transcriptome; gene expression

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA121835

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA121835 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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