Ag Data Commons
Browse

File(s) stored somewhere else

Please note: Linked content is NOT stored on Ag Data Commons and we can't guarantee its availability, quality, security or accept any liability.

Glycine soja USDA GRIN: PI 548656 Genome sequencing and assembly

dataset
posted on 2024-01-26, 23:14 authored by USDA-ARS, Glycine max cv Lee and Glycine soja PI 483463 sequencing consortium, SoyBase
The aims of this project were to generate a high-quality reference genome assembly for Glycine soja accession PI 483463, which shows high genotypic diversity with respect to elite cultivars from Glycine max (soybean). The assembly incorporates PacBio and Illumina sequence and optical mapping from NRGene. Pseudomolecule anchoring of scaffolds was accomplished using two dense genetic maps as well as synteny comparisons with the Glycine max reference assembly for cultivar Williams 82 (JGI Glyma.Wm82.a2) and Glycine max cultivar Lee.

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2018-01-28

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

genomics; sequence analysis; genome assembly

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA407822

Usage metrics

    Categories

    Exports

    RefWorks
    BibTeX
    Ref. manager
    Endnote
    DataCite
    NLM
    DC