Glycine soja USDA GRIN: PI 548656 Genome sequencing and assembly

dataset

posted on 2024-09-29, 05:41 authored by USDA-ARS, Glycine max cv Lee and Glycine soja PI 483463 sequencing consortium, SoyBase

The aims of this project were to generate a high-quality reference genome assembly for Glycine soja accession PI 483463, which shows high genotypic diversity with respect to elite cultivars from Glycine max (soybean). The assembly incorporates PacBio and Illumina sequence and optical mapping from NRGene. Pseudomolecule anchoring of scaffolds was accomplished using two dense genetic maps as well as synteny comparisons with the Glycine max reference assembly for cultivar Williams 82 (JGI Glyma.Wm82.a2) and Glycine max cultivar Lee.

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2018-01-29

Theme

Non-geospatial

ISO Topic Category

biota

National Agricultural Library Thesaurus terms

genomics; sequence analysis; genome assembly

Pending citation

Public Access Level

Public

Accession Number

PRJNA407822

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA407822 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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Keywords

Glycine soja eEukaryotes genome sequencing and assembly

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