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Glycine max "Lee" genome sequencing and assembly

dataset

posted on 2024-06-11, 05:45 authored by USDA-ARS, Glycine max cv Lee and Glycine soja PI 483463 sequencing consortium, SoyBase

The aims of this project were to generate a high-quality reference genome assembly for soybean cultivar "Lee," an important southern cultivar that was released in 1958 and used as a parent in many subsequent southern soybean varieties. The assembly incorporates PacBio and Illumina sequence and optical mapping from NRGene. Pseudomolecule anchoring of scaffolds was accomplished using two dense genetic maps as well as synteny comparisons with Glycine max reference assembly for cultivar Williams 82 and Glycine soja PI PI483463.

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2018-01-28

Theme

Non-geospatial

ISO Topic Category

biota

National Agricultural Library Thesaurus terms

genomics; sequence analysis; genome assembly

Pending citation

Public Access Level

Public

Accession Number

PRJNA407817

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA407817 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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Keywords

Glycine max eEukaryotes genome sequencing and assembly

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