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Glycine max Genome sequencing and assembly

dataset
posted on 2024-01-26, 23:04 authored by USDA ARS
Breeding for pathogen resistance is an important objective to improve and protect soybean yields. Brown stem rot (BSR), caused by the fungus Phialophora gregata, reduces yield by as much as 38%. To date, three dominant BSR resistance genes have been identified: Rbs1, Rbs2, and Rbs3, however the gene networks regulating defense responses to BSR remain unknown. Further, identifying resistant germplasm by genotyping or phenotyping remains difficult due to complexities of soybean/P. gregata interactions. To better understand resistance mechanisms, we conducted RNA-Seq of P. gregata infected and mock infected leaf, stem, and root tissues of both a resistant (PI 437970, Rbs3) and a susceptible (Corsoy 79) soybean genotype. Samples were collected one-week post infection. Our bioinformatic analyses focused on treatment, genotype, and treatment by genotype effects on gene expression

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2016-10-17

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

genomics; sequence analysis; genome assembly

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA348731

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