Gerris buenoi genome annotations v0.5.3
The Gerris buenoi genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. This dataset presents the Gerris buenoi gene set BCM_v_0.5.3, which was generated computationally. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Gerris buenoi genome assembly 1.0.
NOTE: This gene set is an unstable pre-release (v0.5.3), and was provided to facilitate manual curation and analyses before the official gene set is released. Gene identifiers from this gene set will likely not be maintained.
If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use: https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use
Resources in this dataset:
Resource Title: Gerris buenoi genome annotations v0.5.3 for genome assembly Gerris buenoi v1.0 .
File Name: GBUE_BCM_version_0.5.3.tar.gz
Resource Description: The attached tar.gz archive (GBUE_BCM_version_0.5.3.tar.gz) contains the following files: GBUE.CDS.fna. CDS sequences of Gerris buenoi genome annotations v0.5.3. GBUE.faa. Amino acid sequences of Gerris buenoi genome annotations v0.5.3. GBUE.fna. cDNA sequences of Gerris buenoi genome annotations v0.5.3. GBUE.Models.gff3. Gff3 of all gene predictions of Gerris buenoi genome annotations v0.5.3. GBUE.Analysis.gff3 Gff3 of all evidence contributing to Gerris buenoi genome annotations v0.5.3.
Funding
European Research Council: 616346
National Human Genome Research Institute: U54 HG003273
Deutsche Forschungsgemeinschaft: PA 2044/1-1
Deutsche Forschungsgemeinschaft: SFB 680
History
Data contact name
Armisén, DavidData contact email
davidarmisen@gmail.comPublisher
Ag Data CommonsTheme
- Not specified
ISO Topic Category
- biota
Ag Data Commons Group
- Insects - i5K
National Agricultural Library Thesaurus terms
genomics; genome assembly; Gerris buenoi; sequence analysisPending citation
- No
Public Access Level
- Public