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GBUE_BCM_version_0.5.3.tar.gz (183.46 MB)

Gerris buenoi genome annotations v0.5.3

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posted on 2024-02-09, 18:19 authored by David Armisén, Rajendhran Rajakumar, Markus Friedrich, Joshua B. Benoit, Hugh M. Robertson, Kristen A. Panfilio, Seung-Joon Ahn, Monica Poelchau, Hsu Chao, Huyen Dinh, HarshaVardhan Doddapaneni, Shannon Dugan-Perez, Richard A. Gibbs, Daniel S.T. Hughes, Yi Han, Sandra L. Lee, Shwetha C. Murali, Donna M. Muzny, Jiaxin Qu, Kim C. Worley, Monica Munoz-Torres, Ehab Abouheif, François Bonneton, Travis Chen, Li-Mei Chiang, Christopher Childers, Andrew Cridge, Antonin Crumière, Amélie Decaras, Elise Didion, Elizabeth J. Duncan, Elena Elpidina, Marie Julie Fave, Cedric Finet, Chris G.C. Jacobs, Alys Jarvela, Emily C. Jennings, Jeffery W. Jones, Maryna Lesoway, Mackenzie R. Lovegrove, Alexander Martynov, Brenda Oppert, Angelica Lilico-Ouachour, Arjuna Rajakumar, Peter N. Refki, Andrew J. Rosendale, Maria Emilia Santos, William Toubiana, Maurijn van der Zee, Iris M. Vargas Jentzsch, Aidamalia Vargas Lowman, Sèverine Viala, Stephen Richards, Abderrahman Khila

The Gerris buenoi genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. This dataset presents the Gerris buenoi gene set BCM_v_0.5.3, which was generated computationally. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the Gerris buenoi genome assembly 1.0.

NOTE: This gene set is an unstable pre-release (v0.5.3), and was provided to facilitate manual curation and analyses before the official gene set is released. Gene identifiers from this gene set will likely not be maintained.

If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use:

Resources in this dataset:

  • Resource Title: Gerris buenoi genome annotations v0.5.3 for genome assembly Gerris buenoi v1.0 .

    File Name: GBUE_BCM_version_0.5.3.tar.gz

    Resource Description: The attached tar.gz archive (GBUE_BCM_version_0.5.3.tar.gz) contains the following files: GBUE.CDS.fna. CDS sequences of Gerris buenoi genome annotations v0.5.3. GBUE.faa. Amino acid sequences of Gerris buenoi genome annotations v0.5.3. GBUE.fna. cDNA sequences of Gerris buenoi genome annotations v0.5.3. GBUE.Models.gff3. Gff3 of all gene predictions of Gerris buenoi genome annotations v0.5.3. GBUE.Analysis.gff3 Gff3 of all evidence contributing to Gerris buenoi genome annotations v0.5.3.


European Research Council: 616346

National Human Genome Research Institute: U54 HG003273

Deutsche Forschungsgemeinschaft: PA 2044/1-1

Deutsche Forschungsgemeinschaft: SFB 680


Data contact name

Armisén, David

Data contact email


Ag Data Commons


  • Not specified

ISO Topic Category

  • biota

Ag Data Commons Group

  • Insects - i5K

National Agricultural Library Thesaurus terms

genomics; genome assembly; Gerris buenoi; sequence analysis

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Armisén, David, et al. (2018). Gerris buenoi genome annotations v0.5.3. Ag Data Commons.

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