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GBUE_OGSv1-0.tar_0.gz (21.5 MB)

Gerris buenoi Official Gene set v1.0

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posted on 2024-02-09, 18:19 authored by David Armisén, Rajendhran Rajakumar, Markus Friedrich, Joshua B. Benoit, Hugh M. Robertson, Kristen A. Panfilio, Seung-Joon Ahn, Monica Poelchau, Hsu Chao, Huyen Dinh, HarshaVardhan Doddapaneni, Shannon Dugan-Perez, Richard A. Gibbs, Daniel S.T. Hughes, Yi Han, Sandra L. Lee, Shwetha C. Murali, Donna M. Muzny, Jiaxin Qu, Kim C. Worley, Monica Munoz-Torres, Ehab Abouheif, François Bonneton, Travis Chen, Li-Mei Chiang, Christopher Childers, Andrew Cridge, Antonin Crumière, Amélie Decaras, Elise Didion, Elizabeth J. Duncan, Elena Elpidina, Marie Julie Fave, Cedric Finet, Chris G.C. Jacobs, Alys Jarvela, Emily C. Jennings, Jeffery W. Jones, Maryna Lesoway, Mackenzie R. Lovegrove, Alexander Martynov, Brenda Oppert, Angelica Lilico-Ouachour, Arjuna Rajakumar, Peter N. Refki, Andrew J. Rosendale, Maria Emila Santos, William Toubiana, Maurijn van der Zee, Iris M. Vargas Jentzsch, Aidamalia Vargas Lowman, Sèverine Viala, Stephen Richards, Abderrahman Khila

The Gerris buenoi genome was recently sequenced and annotated as part of the i5k pilot project by the Baylor College of Medicine. The Gerris buenoi research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.0. The OGS is an integration of automatic gene predictions from Maker (performed by Dan Hughes at Baylor College of Medicine) with manual annotations by the research community (done via the Apollo manual annotation software).

If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use:

Resources in this dataset:

  • Resource Title: Gerris buenoi Official Gene Set OGSv1.0 .

    File Name: GBUE_OGSv1-0.tar.gz

    Resource Description:

    The attached tar.gz archive (GBUE_OGS_v1-0.tar.gz) contains the following files:

    GBUE_OGSv1-0_CDS.fa. CDS sequences of Gerris buenoi genome annotations OGSv1.0.

    GBUE_OGSv1-0_pep.fa. Amino acid sequences of Gerris buenoi genome annotations OGSv1.0.

    GBUE_OGSv1-0_trans.fa. cDNA sequences of Gerris buenoi genome annotations OGSv1.0.

    GBUE_OGSv1-0.gff. Gff3 of all gene predictions of Gerris buenoi genome annotations OGSv1.0

    GBUE_OGSv1-0_idmap.txt. A mapping file describing ID and name updates from dataset Gerris buenoi genome annotations v0.5.3.

    readme. This file briefly describes how the dataset Gerris buenoi Official Gene Set OGSv1.0 was generated.


European Research Council: 616346

National Human Genome Research Institute: U54 HG003273

Deutsche Forschungsgemeinschaft: PA 2044/1-1

Deutsche Forschungsgemeinschaft: SFB 680


Data contact name

Armisén, David

Data contact email


Ag Data Commons


  • Not specified

ISO Topic Category

  • biota

Ag Data Commons Group

  • Insects - i5K

National Agricultural Library Thesaurus terms

genomics; genes; prediction; sequence analysis; nucleotide sequences; Gerris buenoi

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Armisén, David, et al. (2018). Gerris buenoi Official Gene set v1.0. Ag Data Commons.

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