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Gerris buenoi Genome Assembly 1.0

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posted on 2024-02-08, 23:15 authored by David Armisén, Rajendhran Rajakumar, Markus Friedrich, Joshua B. Benoit, Hugh M. Robertson, Kristen A. Panfilio, Seung-Joon Ahn, Monica Poelchau, Hsu Chao, Huyen Dinh, Harshavardhan Doddapaneni, Shannon Dugan-Perez, Richard A. Gibbs, Daniel S.T. Hughes, Yi Han, Sandra L. Lee, Shwetha C. Murali, Donna M. Muzny, Jiaxin Qu, Kim C. Worley, Monica Munoz-Torres, Ehab Abouheif, François Bonneton, Travis Chen, Li-Mei Chiang, Christopher Childers, Andrew Cridge, Antonin Crumière, Amélie Decaras, Elise Didion, Elizabeth J. Duncan, Elena Elpidina, Marie Julie Fave, Cedric Finet, Chris G.C. Jacobs, Alys Jarvela, Emily C. Jennings, Jeffery W. Jones, Maryna Lesoway, Mackenzie R. Lovegrove, Alexander Martynov, Brenda Oppert, Angelica Lilico-Ouachour, Arjuna Rajakumar, Peter N. Refki, Andrew J. Rosendale, Maria Emilia Santos, William Toubiana, Maurijn van der Zee, Iris M. Vargas Jentzsch, Aidamalia Vargas Lowman, Sèverine Viala, Stephen Richards, Abderrahman Khila

The Baylor College of Medicine recently sequenced and annotated the Gerris buenoi genome as part of the i5k pilot project. This dataset presents the Gerris buenoi genome v1.0. This assembly version is the pre-release version, prior to filtering and quality control by the National Center for Biotechnology Information's GenBank resource. The corresponding genome assembly in NCBI is GCA_001010745.1

If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use: https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use


Resources in this dataset:

  • Resource Title: Gerris buenoi genome assembly v1.0 fasta and agp files for contigs and scaffolds .

    File Name: GBUE_BCM_assembly_v1-0.tar.gz

    Resource Description:

    The attached tar.gz archive (GBUE_BCM_assembly_v1-0.tgz ) contains the following files:

    Gbue.contigs.80.fa. This file contains the sequence information of the contigs of the Gerris buenoi 1.0 assembly.

    Gbue.scaffolds.50.fa. This file contains the sequence information of the scaffolds of the Gerris buenoi 1.0 assembly.

    Gbue.agp.V2. This file contains information linking the contigs and scaffolds for this assembly. A description of the agp format is available here: http://www.ncbi.nlm.nih.gov/projects/genome/assembly/agp/AGP_Specification.shtml

Funding

European Research Council: 616346

National Human Genome Research Institute: U54 HG003273

Deutsche Forschungsgemeinschaft: PA 2044/1-1

Deutsche Forschungsgemeinschaft: SFB 680

History

Data contact name

Armisén, David

Data contact email

davidarmisen@gmail.com

Publisher

Ag Data Commons

Theme

  • Not specified

ISO Topic Category

  • biota

Ag Data Commons Group

  • Insects - i5K

National Agricultural Library Thesaurus terms

genome assembly; Gerris buenoi; sequence analysis; nucleotide sequences

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Armisén, David, et al. (2018). Gerris buenoi Genome Assembly 1.0. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1423870

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    Categories

    Keywords

    Organism projecti5kInsectsGerris buenoi

    Licence

    CC BY 4.0

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