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Genotyping-by-sequencing (GBS) a tepary bean (Phaseolus acutifolius) diversity panel

dataset
posted on 2024-11-23, 22:24 authored by University of Georgia
A diversity panel of tepary beans was assembled and genotyped via GBS. Non-tepary samples were also included. Multiplexed GBS reads of tepary beans and other Phaseolus spp. GBS libraries were prepared with ApeKI restriction enzyme using methods optimized for Phaseolus vulgaris (Hart and Griffiths 2015). The fastq files are named according to the flowcell ID and lane number used to generate the sequence data.

Funding

USAID: S01.A4

W4150 Regional Hatch: Breeding Phaseolus Beans for Resilience, Sustainable Production, and Enhanced Nutritional Value

USDA-ARS

USDA

NSF: NSF-1828149

Colorado Experiment Station

USDA-NIFA: 2022-67013-37119

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2023-04-03

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA951733

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA951733 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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    Keywords

    raw sequence readseRawSequenceReads

    Licence

    Copyright Undetermined

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