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Genome sequences of members of the Fusarium oxysporum species complex

dataset
posted on 2024-06-11, 06:17 authored by US Department of Agriculture, Agriculture Research Service
Members of the Fusarium oxysporum species complex can cause severe disease on numerous economically important plant species, but the can also occur in plants as endophytes and they are frequently recovered from soil. Most members of the complex are referred to as F. oxysporum, but over the past several years several species previously referred to as F. oxysporum have been formally described (e.g., F. nirenbergiae and F. odoratissimum). Members of the complex tend to have large accessory genomes contained on multiple lineage-specific chromosomes. At least some members can produce multiple secondary metabolites (e.g., bikaverin, fusaric acid, fusarubins, and moniliformin), but they are generally not considered to contribute significantly to mycotoxin contamination problems in food and feed crops. Two isolates recovered from carnation growing in Korea can produce fumonisin mycotoxins. Whole genome sequence analysis of one isolate (strain NRRL 39464 = CAR2 = FRC O-1890) has confirmed the presence of the fumonisin biosynthetic gene cluster.

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2019-12-17

Theme

  • Non-geospatial

ISO Topic Category

  • biota

Ag Data Commons Group

  • ARS Culture Collection

National Agricultural Library Thesaurus terms

genomics; sequence analysis; genome assembly

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA596293

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA596293 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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