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Genome sequence comparisons of Oaxacan Green Dent to other maize varieties

dataset
posted on 2025-03-07, 02:55 authored by USDA-ARS
Oaxacan Green Dent is a maize (Zea mays L.) cultivar marketed as an introduced Mexican heritage variety adapted to the higher latitudes of the USA. Its adaptation and appearance contradict an origin in Oaxaca, Mexico, however, and no indigenous cultivars in Oaxaca are known to have the unique kernel colors of Oaxacan Green Dent. We compared phenotypes and genotypes of Oaxacan Green Dent sampled from three different sources along with several Corn Belt cultivars and 15 cultivars collected from a wide range of geography, altitude, and cultural groups in Oaxaca. Multivariate analysis of 13 phenotypic traits measured in a field experiment suggested that Oaxacan Green Dent is more closely related to Corn Belt Dents than to Oaxacan cultivars. Genomic analysis from DNA sequencing demonstrated unambiguously that Oaxacan Green Dents are even more distantly related to Oaxacan cultivars than typical USA Corn Belt Dent cultivars are.

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2024-11-08

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA1183640

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA1183640 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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