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Genome assembly of the obligate heterozygous red clover Trifolium pratense

Name: Genome assembly of the obligate heterozygous red clover Trifolium pratense
Published: 2024-06-11T06:43:15+00:00
License: https://rightsstatements.org/vocab/UND/1.0/
Keywords: raw sequence reads

dataset

posted on 2024-06-11, 06:43 authored by USDA ARS

This project sought to use the latest in DNA sequencing technologies to assemble sequence from Trifolium pratense (red clover) into continuous, chromosome-scale scaffolds. The assembly was generated by deep sequencing using PacBio HiFi reads, and scaffolding was accomplished using Omni-C linkage data. Finally, linkage-group scaffolds were created using a combination of EST linkage map data and Oxford Nanopore reads. The integration of many different technologies and orthogonal datasets resulted in the most continuous assembly of red clover yet released.

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2021-08-12

Theme

Non-geospatial

ISO Topic Category

biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

Public Access Level

Public

Accession Number

PRJNA754186

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA754186 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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Keywords

raw sequence reads

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