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Genome assembly of the obligate heterozygous red clover Trifolium pratense

dataset
posted on 2024-01-27, 05:11 authored by USDA ARS
This project sought to use the latest in DNA sequencing technologies to assemble sequence from Trifolium pratense (red clover) into continuous, chromosome-scale scaffolds. The assembly was generated by deep sequencing using PacBio HiFi reads, and scaffolding was accomplished using Omni-C linkage data. Finally, linkage-group scaffolds were created using a combination of EST linkage map data and Oxford Nanopore reads. The integration of many different technologies and orthogonal datasets resulted in the most continuous assembly of red clover yet released.

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2021-08-12

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA754186

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