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Genome assemblies and transcriptomes of an ordinary Valencia sweet orange and three irradiation-induced mutants

dataset
posted on 2024-01-27, 00:16 authored by Clemson University
A chromosomal level phased assembly of an ordinary Valencia sweet orange (DVS) was acquired by de novo assembly using Pacbio CLR reads. We also carried out whole-genome sequencing and de novo assembly of three irradiation-induced mutants (SF, T19, and T78) to detect the somatic mutations in them. SF and T19 were derived from the same irradiation-induced branch, and T78 was from a different irradiation-induced branch. SF which had a lost tag was identified to be identical to T19 according to the genome sequencing data. Whole transcriptome sequencing of leaves collected from three replicate trees were carried out for DVS, T19, and T78.

Funding

NIFA, 2017-70016-26051

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2021-06-08

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

genomics; sequence analysis; genome assembly

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA735893

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