Genome annotation data from Calonectria species

dataset

posted on 2023-11-30, 12:24 authored by Nicholas LeblancNicholas Leblanc

<p>Annotation data were generated from existing genome assemblies of Calonectria henricotiae JAC13-131 (aka P-10-5865) and C. pseudonaviculata JAC13-27 (aka CT1). Gene prediction and annotations were conducted using the Funannotate v1.8.1 pipeline (<a href="https://funannotate.readthedocs.io/en/latest/">https://funannotate.readthedocs.io/en/latest/</a>).</p>

Funding

National Institute of Food and Agriculture, 2019-67012-29631

History

Related Materials

1.
DOI - Is supplement to Rogers, L. W., Koehler, A. M., Crouch, J. A., Cubeta, M. A., & LeBlanc, N. R. (2022). Comparative genomic analysis reveals contraction of gene families with putative roles in pathogenesis in the fungal boxwood pathogens Calonectria henricotiae and C. pseudonaviculata. BMC Ecology and Evolution, 22(1). https://doi.org/10.1186/s12862-022-02035-4

Data contact name

LeBlanc, Nicholas

Data contact email

nicholas.leblanc@usda.gov

Publisher

Ag Data Commons

Temporal Extent Start Date

2020-01-01

Temporal Extent End Date

2023-07-01

Theme

Not specified

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[-121.65521621704,36.673263748673]},"type":"Feature","properties":{}},{"geometry":{"type":"Point","coordinates":[-121.60892128944,36.672404846288]},"type":"Feature","properties":{}}]}

ISO Topic Category

biota

National Agricultural Library Thesaurus terms

Calonectria; genome assembly; genes; plant pathogens; fungi

OMB Bureau Code

005:18 - Agricultural Research Service

OMB Program Code

005:040 - National Research

ARS National Program Number

Primary article PubAg Handle

https://handle.nal.usda.gov/10113/7858468

Pending citation

Public Access Level

Public

Preferred dataset citation

LeBlanc, Nicholas R (2023). Genome annotation data from Calonectria species. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1529351