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Genetic fingerprinting of 184 Aspergillus from Ethiopia isolated in 2015 from peanut seeds, raw data

dataset

posted on 2024-02-15, 22:47 authored by Renee S. Arias, Abdi Mohammed

Genetic fingerprinting of 184 Aspergillus section Flavi isolates from Ethiopia screened with 24 Insertion/Deletion markers located within the aflatoxin-biosynthesis gene cluster. Each file name contains in this order: isolate number, marker number, range of base pairs on the aflatoxin-biosynthesis cluster where the marker is located, and well position within the 384 microplate used for capillary electrophoresis.

Resources in this dataset:

Resource Title: AFLC01.

File Name: 01AFC.zip
Resource Description: Genetic fingerprinting of 184 Aspergillus isolates from Ethiopia screened with Insertion/Deletion marker AFLC01.

Resource Title: AFLC02.

File Name: 02AFC.zip
Resource Description: Description: Genetic fingerprinting of 184 Aspergillus isolates from Ethiopia screened with Insertion/Deletion marker AFLC02

Resource Title: AFLC03.

File Name: 03AFC.zip
Resource Description: Description: Genetic fingerprinting of 184 Aspergillus isolates from Ethiopia screened with Insertion/Deletion marker AFLC03

Resource Title: AFLC04.

File Name: 04AFC.zip
Resource Description: Genetic fingerprinting of 184 Aspergillus isolates from Ethiopia screened with Insertion/Deletion marker AFLC04

Resource Title: AFLC05.

File Name: 05AFC.zip
Resource Description: Genetic fingerprinting of 184 Aspergillus isolates from Ethiopia screened with Insertion/Deletion marker AFLC05

Resource Title: AFLC06.

File Name: 06AFC.zip
Resource Description: Genetic fingerprinting of 184 Aspergillus isolates from Ethiopia screened with Insertion/Deletion marker AFLC06

Resource Title: AFLC07.

File Name: 07AFC.zip
Resource Description: Genetic fingerprinting of 184 Aspergillus isolates from Ethiopia screened with Insertion/Deletion marker AFLC07

Resource Title: AFLC08.

File Name: 08AFC.zip
Resource Description: Genetic fingerprinting of 184 Aspergillus isolates from Ethiopia screened with Insertion/Deletion marker AFLC08

Resource Title: AFLC09.

File Name: 09AFC.zip
Resource Description: Genetic fingerprinting of 184 Aspergillus isolates from Ethiopia screened with Insertion/Deletion marker AFLC09

Resource Title: AFLC10.

File Name: 10AFC.zip
Resource Description: Genetic fingerprinting of 184 Aspergillus isolates from Ethiopia screened with Insertion/Deletion marker AFLC10

Resource Title: AFLC11.

File Name: 11AFC.zip
Resource Description: Genetic fingerprinting of 184 Aspergillus isolates from Ethiopia screened with Insertion/Deletion marker AFLC11

Resource Title: AFLC12.

File Name: 12AFC.zip
Resource Description: Genetic fingerprinting of 184 Aspergillus isolates from Ethiopia screened with Insertion/Deletion marker AFLC12

Resource Title: AFLC13.

File Name: 13AFC.zip
Resource Description: Genetic fingerprinting of 184 Aspergillus isolates from Ethiopia screened with Insertion/Deletion marker AFLC13

Resource Title: AFLC14.

File Name: 14AFC.zip
Resource Description: Genetic fingerprinting of 184 Aspergillus isolates from Ethiopia screened with Insertion/Deletion marker AFLC14

Resource Title: AFLC15.

File Name: 15AFC.zip
Resource Description: Genetic fingerprinting of 184 Aspergillus isolates from Ethiopia screened with Insertion/Deletion marker AFLC15

Resource Title: AFLC16.

File Name: 16AFC.zip
Resource Description: Genetic fingerprinting of 184 Aspergillus isolates from Ethiopia screened with Insertion/Deletion marker AFLC16

Resource Title: AFLC17.

File Name: 17AFC.zip
Resource Description: Genetic fingerprinting of 184 Aspergillus isolates from Ethiopia screened with Insertion/Deletion marker AFLC17

Resource Title: AFLC18.

File Name: 18AFC.zip
Resource Description: Genetic fingerprinting of 184 Aspergillus isolates from Ethiopia screened with Insertion/Deletion marker AFLC18

Resource Title: AFLC19.

File Name: 19AFC.zip
Resource Description: Genetic fingerprinting of 184 Aspergillus isolates from Ethiopia screened with Insertion/Deletion marker AFLC19

Resource Title: AFLC20.

File Name: 20AFC.zip
Resource Description: Genetic fingerprinting of 184 Aspergillus isolates from Ethiopia screened with Insertion/Deletion marker AFLC20

Resource Title: AFLC21.

File Name: 21AFC.zip
Resource Description: Genetic fingerprinting of 184 Aspergillus isolates from Ethiopia screened with Insertion/Deletion marker AFLC21

Resource Title: AFLC22.

File Name: 22AFC.zip
Resource Description: Genetic fingerprinting of 184 Aspergillus isolates from Ethiopia screened with Insertion/Deletion marker AFLC22

Resource Title: AFLC23.

File Name: 23AFC.zip
Resource Description: Genetic fingerprinting of 184 Aspergillus isolates from Ethiopia screened with Insertion/Deletion marker AFLC23

Resource Title: AFLC24.

File Name: 24AFC.zip
Resource Description: Genetic fingerprinting of 184 Aspergillus isolates from Ethiopia screened with Insertion/Deletion marker AFLC24

Funding

USDA-ARS: 6604-21000-003-00D

History

Data contact name

Renee Arias

Data contact email

Renee.Arias@USDA.GOV

Publisher

Ag Data Commons

Intended use

These are the raw data of genetic fingerprinting 184 Isolates of the fungi Aspergillus flavus and Aspergillus parasiticus that were found colonizing peanut seeds in the Oromiya region of Ethiopia. The complete analysis of the data will be submitted as a manuscript to the scientific journal BMC Microbiology. Making the raw data available to the public is a requirement of that journal, and makes it feasible for any reader who wishes to re-analyze them, to have access to the original source of information.

Use limitations

The data can be used in the future to compare them with newly collected isolates of these fungi; and thus, detect possible changes in population genetics that result from the use of pesticides, or biological control in those environments. Data are in .FSA format, were generated with Applied Biosystems DNA Analyzer 3730, and can be easily processed using the software GeneMapper v. 4.1 or higher.

Temporal Extent Start Date

2015-07-02

Theme

Not specified

Geographic Coverage

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Geographic location - description

Oromiya, Ethiopia

ISO Topic Category

biota
farming

National Agricultural Library Thesaurus terms

DNA fingerprinting; Aspergillus; Ethiopia; peanuts; seeds; multigene family; capillary electrophoresis; genetic markers; aflatoxins

OMB Bureau Code

005:18 - Agricultural Research Service

OMB Program Code

005:040 - National Research

ARS National Program Number

Primary article PubAg Handle

https://pubag.nal.usda.gov/catalog/7071276

Pending citation

Public Access Level

Public

Preferred dataset citation

Arias, Renee S.; Mohammed, Abdi (2021). Genetic fingerprinting of 184 Aspergillus from Ethiopia isolated in 2015 from peanut seeds, raw data. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1520771

Usage metrics

Keywords

Ethiopia fingerprinting InDel markers molecular markers aflatoxin Aspergillus NP301 data.gov ARS

Licence

U.S. Public Domain

Exports

RefWorks

BibTeX

Ref. manager

Endnote

DataCite

NLM