Ag Data Commons
Browse

Fusarium oxysporum f. sp. vasinfectum 25433 Genome sequencing and assembly

dataset
posted on 2024-11-23, 22:11 authored by Broad Institute
Members of the F. oxysporum species complex exhibit extraordinary genetic plasticity and cause some of the most destructive and intractable diseases across a diverse spectrum of hosts, including many economically important crops such as banana, cotton, canola, melons, and tomato. The Fusarium Comparative Genomics Project (Ma et al, Nature 2010) highlighted the existence of lineage-specific chromosomes that are enriched for transposable elements and encode genes that are pathogenicity related. The comparative analysis provides evidence for the horizontal transfer (HT) of four chromosomes accounting for 25% of the genome in an asexual, pathogenic fungal species, Fusarium oxysporum. The direct contribution of the chromosomes to pathogenicity is indicated by the fact that they encode known virulence factors such as effector proteins, necrosis-inducing peptides and a large array of enzymes targeting plant substrates, but lack genes involved in primary metabolism. The objective of this project is to search for the presence of pathogenicity related chromosomes in other F. oxysporum isolates that cause disease in different plant hosts.

Funding

USDA-NIFA: 2008-35600-04691

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2012-04-27

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

genomics; sequence analysis; genome

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA73537

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA73537 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

Usage metrics

    Categories

    Exports

    RefWorks
    BibTeX
    Ref. manager
    Endnote
    DataCite
    NLM
    DC