Frankliniella occidentalis genome assembly v1.0
The Baylor College of Medicine has sequenced and annotated the Frankliniella occidentalis genome as part of the i5k pilot project. This dataset presents the Frankliniella occidentalis genome v1.0. This assembly version is the pre-release version, prior to filtering and quality control by the National Center for Biotechnology Information's GenBank resource. If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use.
Resources in this dataset:
Resource Title: Frankliniella occidentalis genome assembly v1.0 fasta and agp files for contigs and scaffolds .
File Name: fraocc_BCM_assembly_v1-0.tar.gz
Resource Description:
The attached tar.gz archive (FOCC_BCM_assembly_v1-0.tgz ) contains the following files:
Focc.contigs.80.fa. This file contains the sequence information of the contigs of the Frankliniella occidentalis 1.0 assembly.
Focc.scaffolds.50.fa. This file contains the sequence information of the scaffolds of the Frankliniella occidentalis 1.0 assembly.
Focc.agp.V2. This file contains information linking the contigs and scaffolds for this assembly. A description of the agp format is available here: http://www.ncbi.nlm.nih.gov/projects/genome/assembly/agp/AGP_Specification.shtml
Funding
National Human Genome Research Institute: U54 HG003273
History
Data contact name
Rotenberg, DorithData contact email
drotenb@ncsu.eduPublisher
Ag Data CommonsTheme
- Not specified
ISO Topic Category
- biota
Ag Data Commons Group
- Insects - i5K
National Agricultural Library Thesaurus terms
genome assembly; nucleotide sequences; sequence analysis; Frankliniella occidentalisPending citation
- No
Public Access Level
- Public
