Ag Data Commons
fraocc_BCM_assembly_v1-0.tar.gz (158.59 MB)

Frankliniella occidentalis genome assembly v1.0

Download (158.59 MB)
posted on 2024-02-15, 17:17 authored by Dorith RotenbergDorith Rotenberg, Richard A. Gibbs, Kim C. Worley, Shwetha C. Murali, Sandra L. Lee, Donna M. Muzny, Daniel S.T. Hughes, Hsu Chao, Huyen Dinh, Harshavardhan Doddapaneni, Jiaxin Qu, Shannon Dugan-Perez, Yi Han, Stephen Richards

The Baylor College of Medicine has sequenced and annotated the Frankliniella occidentalis genome as part of the i5k pilot project. This dataset presents the Frankliniella occidentalis genome v1.0. This assembly version is the pre-release version, prior to filtering and quality control by the National Center for Biotechnology Information's GenBank resource. If you wish to use this dataset, please follow the Baylor College of Medicine's conditions for data use.

Resources in this dataset:

  • Resource Title: Frankliniella occidentalis genome assembly v1.0 fasta and agp files for contigs and scaffolds .

    File Name: fraocc_BCM_assembly_v1-0.tar.gz

    Resource Description:

    The attached tar.gz archive (FOCC_BCM_assembly_v1-0.tgz ) contains the following files:

    Focc.contigs.80.fa. This file contains the sequence information of the contigs of the Frankliniella occidentalis 1.0 assembly.

    Focc.scaffolds.50.fa. This file contains the sequence information of the scaffolds of the Frankliniella occidentalis 1.0 assembly.

    Focc.agp.V2. This file contains information linking the contigs and scaffolds for this assembly. A description of the agp format is available here:


National Human Genome Research Institute: U54 HG003273


Data contact name

Rotenberg, Dorith

Data contact email


Ag Data Commons


  • Not specified

ISO Topic Category

  • biota

Ag Data Commons Group

  • Insects - i5K

National Agricultural Library Thesaurus terms

genome assembly; nucleotide sequences; sequence analysis; Frankliniella occidentalis

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Rotenberg, Dorith; Gibbs, Richard A.; Worley, Kim C.; Murali, Shwetha C.; Lee, Sandra L.; Muzny, Donna M.; Hughes, Daniel S.T.; Chao, Hsu; Dinh, Huyen; Doddapaneni, Harshavardhan; Qu, Jiaxin; Dugan-Perez, Shannon; Han, Yi; Richards, Stephen (2019). Frankliniella occidentalis genome assembly v1.0. .

Usage metrics


    Ref. manager