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Frankliniella occidentalis Official Gene Set OGSv1.1

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Version 2 2024-02-09, 18:33
Version 1 2024-01-29, 16:55
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posted on 2024-02-09, 18:33 authored by Dorith RotenbergDorith Rotenberg, Hugh M. Robertson, Jonathan E. Oliver, Joshua B. Benoit, Simon Snoeck, Aaron A. Baumann, Sulley Ben Mahmoud, Jan A. Veenstra, Chris G.C. Jacobs, Yoonseong Park, Kristen A. Panfilio, Shirani M.K. Widana Gamage, Seung-Joon Ahn, Iris M. Vargas Jentzsch, Emily C. Jennings, Elise M. Szuter, Olivier Christiaens, Jack Scanlan, Clauvis Nji Tizi Taning, Alexander Martynov, Nicolás E. Bejerman, Ajay Nair, Jeffery W. Jones, Markus Friedrich, Maurijn van der Zee, Peter Dearden, Chieka Minakuchi, David Armisén, Derek J. Schneweis, Fernando Lucas Melo, Monica Poelchau, Wannes Dermauw, Daniel S.T. Hughes, Stephen Richards, Elise M. Didion, Christopher J. Holmes, Andrew J. Rosendale, Andrew Rosselot, Amanda Dolan, Anna E. Whitfield, Diane E. Ullman, Ralf G. Dietzgen, Guy Smagghe, Thomas Van Leeuwen, John H. Warren

The Frankliniella occidentalis Official Gene Set fraocc_OGSv1.1 is an update of OGSv1.0 (https://doi.org/10.15482/USDA.ADC/1504029). OGSv1.0 is an integration of automatic gene predictions from the Baylor College of Medicine's i5k pilot project, with manual annotations by the research community (performed via the Apollo manual curation software, http://genomearchitect.org/). OGSv1.1 was updated from OGSv1.0 (https://doi.org/10.15482/USDA.ADC/1504029) to the coordinates of genome assembly GCA_000697945.4 (https://www.ncbi.nlm.nih.gov/assembly/GCA_000697945.4) using https://github.com/NAL-i5K/coordinates_conversion/.


Resources in this dataset:

  • Resource Title: Frankliniella occidentalis Official Gene Set OGSv1.1.

    File Name: fraocc_OGSv1.1.tar.gz

    Resource Description: The attached tar.gz archive (fraocc_OGSv1.1.tar.gz) contains the following files:

    fraocc_OGSv1.1_cds.fa. CDS sequences of Frankliniella occidentalis genome annotations OGSv1.1.

    fraocc_OGSv1.1_pep.fa. Amino acid sequences of Frankliniella occidentalis genome annotations OGSv1.1.

    fraocc_OGSv1.1_trans.fa. Transcript sequences of Frankliniella occidentalis genome annotations OGSv1.1.

    fraocc_OGSv1.1.gff. Gff3 of all gene predictions of Frankliniella occidentalis genome annotations OGSv1.1.

    readme. This file briefly describes how the dataset Frankliniella occidentalis Official Gene Set OGSv1.1 was generated.

Funding

National Human Genome Research Institute

History

Data contact name

Rotenberg, Dorith

Data contact email

drotenb@ncsu.edu

Publisher

Ag Data Commons

Temporal Extent Start Date

2019-01-01

Theme

  • Not specified

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"Polygon","coordinates":[[[-534.375,-82.676284978349],[-534.375,85.051128779807],[-165.9375,85.051128779807],[-165.9375,-82.676284978349],[-534.375,-82.676284978349]]]},"type":"Feature","properties":{}}]}

ISO Topic Category

  • biota

Ag Data Commons Group

  • Insects - i5K

National Agricultural Library Thesaurus terms

genomics; Frankliniella occidentalis; genes; prediction; bacterial contamination

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Rotenberg, Dorith; Robertson, Hugh M.; Oliver, Jonathan E.; Benoit, Joshua B.; Snoeck, Simon; Baumann, Aaron A.; Mahmoud, Sulley Ben; Veenstra, Jan A.; Jacobs, Chris G.C.; Park, Yoonseong; Panfilio, Kristen A.; Widana Gamage, Shirani M.K.; Ahn, Seung-Joon; Vargas Jentzsch, Iris M.; Jennings, Emily C.; Szuter, Elise M.; Christiaens, Olivier; Scanlan, Jack; Taning, Clauvis Nji Tizi; Martynov, Alexander; Bejerman, Nicolás E.; Nair, Ajay; Jones, Jeffery W.; Friedrich, Markus; van der Zee, Maurijn; Dearden, Peter; Minakuchi, Chieka; Armisén, David; Schneweis, Derek J.; Melo, Fernando Lucas; Poelchau, Monica; Dermauw, Wannes; Hughes, Daniel S.T.; Richards, Stephen; Didion, Elise M.; Holmes, Christopher J.; Rosendale, Andrew J.; Rosselot, Andrew; Dolan, Amanda; Whitfield, Anna E.; Ullman, Diane E.; Dietzgen, Ralf G.; Smagghe, Guy; Van Leeuwen, Thomas; Warren, John H. (2020). Frankliniella occidentalis Official Gene Set OGSv1.1. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1504029

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    Categories

    Keywords

    Frankliniella occidentalisWestern flower thripsgenome annotation

    Licence

    CC BY-SA 4.0

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