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Fecal microbiome in animals

dataset
posted on 2024-01-26, 23:24 authored by USDA
Understanding the ecological dynamics of O157:H7 and associated alterations in the animal intestinal microbiome are important to develop strategies to reduce O157:H7 shedding and mitigate outbreaks. To assess the compositional differences in the fecal microbiota of O157:H7 shedding and non-shedding animals, a total of 14 fecal samples from a single farm were analyzed using next-generation shotgun metagenomic sequencing. Findings indicated there may be subtle differences associated with O157:H7 carriage in the fecal metagenomes. The differential taxa and virulence factor -related gene profiles provide significant insights into fecal microbiome of O157:H7 shedding animals.

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2018-08-10

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA485488

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