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Extended spectrum cephalosporin-resistant Escherichia coli on dairy farms

dataset
posted on 2024-06-11, 05:55 authored by USDA ARS
The intestinal tracts of farm animals including dairy cattle are important reservoirs of extended-spectrum β-lactamase (ESBL) producing, especially, third generation cephalosporin (3GC)-resistant E. coli. We found E. coli isolates that were resistant to 3GC but sensitive to 2GC (e.g., cefoxitin) from dairy farms. For further insight of antimicrobial resistance patterns of 3GC-resistant E. coli on dairy farms, whole genome sequencing was performed.

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2018-09-17

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

genomics; sequence analysis; genome

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA491471

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA491471 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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    Keywords

    genome sequencing

    Licence

    Copyright Undetermined

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