Exome capture of ADEPT2 loblolly pine trees

dataset

posted on 2024-11-23, 21:44 authored by Texas A&M University

Loblolly pine, Pinus taeda L., is the most widely planted and commercially important tree species in the southeastern U.S. Exome capture was applied in a population of 375 trees using NimbleGen probes and then sequenced using the Illumina HiSeq 2500 platform. We aim to identify the markers that are associated with the adaptive traits and can be used as molecular tools to screen for superior genotypes under climate change.

Funding

USDA-NIFA: 2011-68002-30185

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2016-04-29

Theme

Non-geospatial

ISO Topic Category

biota

National Agricultural Library Thesaurus terms

sequence analysis

Pending citation

Public Access Level

Public

Accession Number

PRJNA320114

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA320114 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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Keywords

Pinus taeda eEukaryotes raw sequence reads exome targeted loci variation

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