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Eurytemora affinis complex (Atlantic clade) genome assembly v1.0

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posted on 2024-02-13, 12:53 authored by Carol E. Lee, Richard A. Gibbs, Kim C. Worley, Shwetha C. Murali, Sandra L. Lee, Donna M. Muzny, Hsu Chao, Huyen Dinh, Harshavardhan Doddapaneni, Jiaxin Qu, Shannon Dugan-Perez, Yi Han, Stephen Richards
<p>The Baylor College of Medicine has sequenced and annotated the <i>Eurytemora affinis</i> complex (Atlantic clade) genome as part of the i5k pilot project. This dataset presents the <i>Eurytemora affinis</i> complex (Atlantic clade) genome v1.0. This assembly version is the pre-release version, prior to filtering and quality control by the <a href="https://www.ncbi.nlm.nih.gov/assembly/GCA_000591075.1">National Center for Biotechnology Information's GenBank resource</a>. If you wish to use this dataset, please follow the <a href="https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use">Baylor College of Medicine's conditions for data use</a>. </p><div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Eurytemora affinis complex (Atlantic clade) genome assembly v1.0.</p> <p>File Name: euraff_BCM_assembly_v1-0.tar.gz</p><p>Resource Description: </p><p>The attached tar.gz archive (EAFF_BCM_assembly_v1-0.tgz ) contains the following files:</p><p></p> <p>Eaff_11172013.contigs.fa.gz. This file contains the sequence information of the contigs of the <em>Eurytemora affinis</em> complex (Atlantic clade) 1.0 assembly.</p> <p>Eaff_11172013.genome.fa. This file contains the sequence information of the scaffolds of the <em>Eurytemora affinis</em> complex (Atlantic clade) 1.0 assembly.</p> <p>Eaff_11172013.genome.agp. This file contains information linking the contigs and scaffolds for this assembly. A description of the agp format is available here: http://www.ncbi.nlm.nih.gov/projects/genome/assembly/agp/AGP_Specification.shtml</p><p></p></li></ul>

Funding

National Human Genome Research Institute: U54 HG003273

History

Data contact name

Lee, Carol Eunmi

Data contact email

carollee@wisc.edu

Publisher

Ag Data Commons

Temporal Extent Start Date

2016-01-01

Temporal Extent End Date

2017-12-31

Theme

  • Not specified

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[-69.21,48.01]},"type":"Feature","properties":{}}]}

Geographic location - description

Canada: Baie de L'Isle Verte, St. Lawrence estuary (salt marsh), Quebec

ISO Topic Category

  • biota

Ag Data Commons Group

  • Insects - i5K

National Agricultural Library Thesaurus terms

genomics; genome; biotechnology; Eurytemora affinis; sequence analysis

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Lee, Carol E.; Gibbs, Richard A.; Worley, Kim C.; Murali, Shwetha C.; Lee, Sandra L.; Muzny, Donna M.; Chao, Hsu; Dinh, Huyen; Doddapaneni, Harshavardhan; Qu, Jiaxin; Dugan-Perez, Shannon; Han, Yi; Richards, Stephen (2021). Eurytemora affinis complex (Atlantic clade) genome assembly v1.0. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1522903

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