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Eurytemora affinis complex (Atlantic clade) genome annotations v0.5.3

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posted on 2024-02-13, 12:54 authored by Carol E. Lee, Daniel S.T. Hughes, Stephen Richards
<p>This dataset presents the <i>Eurytemora affinis</i> complex (Atlantic clade) gene set BCM_v_0.5.3. RNA-Seq data was used with additional protein homology data for a MAKER automated annotation of the <i>Eurytemora affinis</i> complex (Atlantic clade) genome assembly 1.0. If you wish to use this dataset, please follow the <a href="https://www.hgsc.bcm.edu/bcm-hgsc-conditions-use">Baylor College of Medicine's conditions for data use</a>. </p><div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Eurytemora affinis complex (Atlantic clade) genome annotations v0.5.3.</p> <p>File Name: euraff_BCM_version_0.5.3.tar.gz</p><p>Resource Description: The attached tar.gz archive (EAFF_BCM_version_0.5.3.tar.gz) contains the following files:</p> <p>EAFF.CDS.fna. CDS sequences of Eurytemora affinis complex (Atlantic clade) genome annotations v0.5.3.</p> <p>EAFF.faa. Amino acid sequences of Eurytemora affinis complex (Atlantic clade) genome annotations v0.5.3.</p> <p>EAFF.fna. cDNA sequences of Eurytemora affinis complex (Atlantic clade) genome annotations v0.5.3.</p> <p>EAFF.Models.gff3. Gff3 of all gene predictions of Eurytemora affinis complex (Atlantic clade) genome annotations v0.5.3.</p> <p>EAFF.Analysis.gff3 Gff3 of all evidence contributing to Eurytemora affinis complex (Atlantic clade) genome annotations v0.5.3.</p></li></ul><p></p>

Funding

National Human Genome Research Institute: U54 HG003273

History

Data contact name

Lee, Carol

Data contact email

carollee@wisc.edu

Publisher

Ag Data Commons

Temporal Extent Start Date

2016-01-01

Temporal Extent End Date

2017-12-31

Theme

  • Not specified

Geographic Coverage

Geographic location - description

Canada: Baie de L'Isle Verte, St. Lawrence estuary (salt marsh), Quebec

ISO Topic Category

  • biota

Ag Data Commons Group

  • Insects - i5K

National Agricultural Library Thesaurus terms

genomics; genes; genome assembly; Eurytemora affinis

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Lee, Carol E.; Hughes, Daniel S.T.; Richards, Stephen (2021). Eurytemora affinis complex (Atlantic clade) genome annotations v0.5.3. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1522904

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