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Escherichia coli Genome sequencing and assembly

dataset

posted on 2024-06-11, 05:41 authored by North Dakota State University

We sampled surface soil isolates of Escherichia coli from phylogroups B1B and D to measure their capacity to survive in adverse soil conditions. Whole genome sequencing was performed on E. coli isolates to find genomic variation associated with high and low death rate phenotypes.

Funding

National Science Foundation, NSF1355466

U.S. Department of Agriculture, NYC125438

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2017-02-15

Theme

Non-geospatial

ISO Topic Category

biota

National Agricultural Library Thesaurus terms

genomics; sequence analysis; genome assembly

Pending citation

Public Access Level

Public

Accession Number

PRJNA374835

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA374835 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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Keywords

Escherichia coli eBacteria genome sequencing and assembly raw sequence reads

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