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Ephemera danica manual annotations on genome assembly Edan_1.0

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posted on 2023-12-18, 18:22 authored by Panagiotis Provataris, Hugh M. Robertson, Jeffery Jones, Oliver Niehuis, Agnes Southgate, Seung-Joon Ahn
<p>This dataset presents manual annotations of <a href="https://10.15482/USDA.ADC/1503792">Ephemera danica genome annotations v0.5.3</a> and <a href="https://10.15482/USDA.ADC/1503791">genome assembly v1.0</a>. Manual annotations were performed by individual annotators in the <a href="http://genomearchitect.org/">Apollo software</a> at the i5k Workspace@NAL, and QC'd via the <a href="https://github.com/NAL-i5K/gff3toolkit">GFF3toolkit software</a> and manual inspection. Manual annotations are presented here on the original coordinate system of genome assembly v1.0.</p> <div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Ephemera danica manual annotations on genome assembly Edan_1.0 .</p> <p>File Name: ephdan_manual_annotations.tar.gz</p><p>Resource Description: The attached tar.gz archive (ephdan_manual_annotations.tar.gz) contains the following files: - ephdan_manual_annotations_cds.fa: CDS sequences of the Ephemera danica manual annotations. - ephdan_manual_annotations.gff: GFF3 file of the Ephemera danica manual annotations. - ephdan_manual_annotations_pep.fa: Protein sequences of the Ephemera danica manual annotations. - ephdan_manual_annotations_trans.fa: RNA sequences of the Ephemera danica manual annotations. </p></li></ul>

Funding

National Human Genome Research Institute: U54 HG003273

History

Related Materials

  1. 1.
    URL - Is supplemented by Ephemera danica genome assembly v1.0
  2. 2.
  3. 3.
    URL - Is compiled by Apollo software
  4. 4.
    URL - Is compiled by GFF3toolkit software

Data contact name

Poelchau, Monica

Data contact email

monica.poelchau@usda.gov

Publisher

Ag Data Commons

Theme

  • Not specified

ISO Topic Category

  • biota

Ag Data Commons Group

  • Insects - i5K

National Agricultural Library Thesaurus terms

genomics; Ephemera danica; genome assembly; genome

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Provataris, Panagiotis; Robertson, Hugh M.; Jones, Jeffery; Niehuis, Oliver; Southgate, Agnes; Ahn, Seung-Joon (2020). Ephemera danica manual annotations on genome assembly Edan_1.0. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1518587

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