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Ecdeiocolea monostachya isolate:E001 Genome sequencing

dataset
posted on 2025-01-22, 05:16 authored by United States Department of Agriculture
The Australian wild grass Ecdeiocolea monostachya is a critical outgroup to the Poaceae for comparative genomics analyses. We sequenced the genome of E. monostachya to identify signatures of genetic innovations in the grasses. More broadly, E. monostachya provides a robust foundation for researchers in cereal genomics to utilise this species as an outgroup in studies of evolutionary events conserved and unique to the Poaceae. E. monostachya is recalcitrant to growth from seed or after transplant to botanical gardens. Therefore, we have collected tissue from an individual from a single site in Australia. E. monostachya is expected to be diploid with a genome size of 1.5 Gb based on flow cytometry. A hybrid assembly was generated using MaSuRCA using Illumina and Oxford Nanopore Technology sequencing. Gene models were predicted using RNAseq derived from sheath, flower, and root tissue.

History

Data contact name

BioProject Curation Staff

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2022-10-26

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

genomics; sequence analysis; genome

Pending citation

  • No

Public Access Level

  • Public

Accession Number

PRJNA894727

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA894727 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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