Drosophila takahashii genome assembly Dtak02082011
This research on Drosophila takahashii genomics is part of the Drosophila modENCODE project. The Baylor College of Medicine is studying the comparative genomics of eight species of Drosophila, including biarmipes, bipectinata, elegans, eugracillis, ficusphila, kikkawai, rhopaloa, and takahashii. The genome assembly presented here is the pre-submission version of Dtak_2.0, which is archived at the National Center for Biotechnology as GCA_000224235.2.
Resources in this dataset:
Resource Title: Drosophila takahashii genome assembly Dtak02082011 fasta, agp and qual files .
File Name: BCM_Dtak02082011.tar.gz
Resource Description: The attached tar.gz archive (BCM_Dtak02082011.tar.gz) contains the following files: Dtak02082011-contigs.fa. This file contains the sequence information of the contigs of the Drosophila takahashii Dtak02082011 genome assembly. Dtak02082011-genome.fa. This file contains the sequence information of the scaffolds of the Drosophila takahashii Dtak02082011 genome assembly. Dtak02082011-genome.agp. This file contains information linking the contigs and scaffolds for the Drosophila takahashii Dtak02082011 genome assembly. A description of the agp format is available here: https://www.ncbi.nlm.nih.gov/assembly/agp/AGP_Specification/ Dtak02082011-genome.fa.qual. This file contains quality scores for the Drosophila takahashii Dtak02082011 genome assembly.
Funding
National Institutes of Health: DK015600-18
National Institutes of Health: 1ROIGM082843
National Institutes of Health: U01HB004271
History
Data contact name
Richards, StephenData contact email
stephenr@BCM.EDUPublisher
Ag Data CommonsTemporal Extent Start Date
2011-09-01Theme
- Not specified
Geographic Coverage
{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[120.5258,23.3858]},"type":"Feature","properties":{}}]}Geographic location - description
Yun Shui, TaiwanISO Topic Category
- biota
Ag Data Commons Group
- Insects - i5K
National Agricultural Library Thesaurus terms
Drosophila; genomics; Biological Sciences; Insects and Entomology; genome assemblyPending citation
- No
Public Access Level
- Public