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Drosophila rhopaloa genome annotations v0.5.3 for genome assembly Drho05162011

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posted on 2024-02-16, 20:37 authored by Stephen Richards, Daniel S.T. Hughes

This research on Drosophila rhopaloa genomics is part of the Drosophila modENCODE project.The Baylor College of Medicine is studying the comparative genomics of eight species of Drosophila, including biarmipes, bipectinata, elegans, eugracillis, ficusphila, kikkawai, rhopaloa, and takahashii. RNA-Seq data were used with additional protein homology data for a MAKER automated annotation of the Drosophila rhopaloa genome assembly Drho05162011. This gene set is an unstable pre-release (v0.5.3), and is provided to facilitate manual curation and analyses. Gene identifiers from this gene set will not be maintained.


Resources in this dataset:

  • Resource Title: Drosophila rhopaloa genome annotations v0.5.3 for genome assembly Drho05162011.

    File Name: DRHO_BCM_version_0.5.3-Primary_Gene_Set.tar.gz

    Resource Description: The attached tar.gz archive (DRHO_BCM_version_0.5.3-Primary_Gene_Set.tar.gz) contains the following files:

    DRHO.Analysis.gff3. This gff3 file contains evidence underlying the final gene predictions.

    DRHO.CDS.fna. CDS sequences of Drosophila rhopaloa genome annotations v0.5.3.

    DRHO.faa. Amino acid sequences of Drosophila rhopaloa genome annotations v0.5.3.

    DRHO.fna. cDNA sequences of Drosophila rhopaloa genome annotations v0.5.3.

    DRHO.Models.gff3. Gff3 of all gene predictions of Drosophila rhopaloa genome annotations v0.5.3.

Funding

National Institutes of Health: DK015600-18

National Institutes of Health: 1ROIGM082843

National Institutes of Health: U01HB004271

History

Data contact name

Richards, Stephen

Data contact email

stephenr@BCM.EDU

Publisher

Ag Data Commons

Temporal Extent Start Date

2011-08-31

Theme

  • Not specified

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[108.20286385728,14.496278144804]},"type":"Feature","properties":{}}]}

Geographic location - description

Vietnam

ISO Topic Category

  • biota

Ag Data Commons Group

  • Insects - i5K

National Agricultural Library Thesaurus terms

Drosophila; genomics; Biological Sciences; Insects and Entomology

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Richards, Stephen; Hughes, Daniel S.T. (2021). Drosophila rhopaloa genome annotations v0.5.3 for genome assembly Drho05162011. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1523468

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