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Drosophila biarmipes genome assembly Dbia 2.0

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posted on 2024-02-08, 18:41 authored by Stephen Richards, Jiaxin Qu, Huaiyang Jiang, Matthew N. Batterton, Kerstin P. Blankenburg, Sai Gubbala, Yi Han, Joy C. Jayaseelan, Divya Kalra, Christie L. Kovar, Sandra L. Lee, Mingmei Li, Tittu Mathew, Mala Munidasa, Fiona Ongeri, Lora Perales, Ling-Ling Pu, Nehad Saada, Rebecca L. Thornton, Crystal B. Warner, Yuan-Qing Wu, Xiaoyan Zou, Steven E. Scherer, Kim C. Worley, Donna M. Muzny, Richard A. Gibbs

This research on Drosophila biarmipes genomics is part of the Drosophila modENCODE project. The Baylor College of Medicine is studying the comparative genomics of eight species of Drosophila, including biarmipes, bipectinata, elegans, eugracillis, ficusphila, kikkawai, rhopaloa, and takahashii.


Resources in this dataset:

  • Resource Title: Drosophila biarmipes genome assembly v2.0 fasta, agp and qual files.

    File Name: Dbia_v2.0.tar.gz

    Resource Description: The attached tar.gz archive (Dbia_v2.0.tar.gz) contains the following files: Dbia02082011-contigs.fa. This file contains the sequence information of the contigs of the Drosophila biarmipes 2.0 genome assembly. Dbia02082011-genome.fa. This file contains the sequence information of the scaffolds of the CDrosophila biarmipes 2.0 genome assembly. Dbia02082011-genome.agp. This file contains information linking the contigs and scaffolds for the Drosophila biarmipes 2.0 genome assembly. A description of the agp format is available here: https://www.ncbi.nlm.nih.gov/assembly/agp/AGP_Specification/ Dbia02082011-genome.fa.qual. This file contains quality scores for the Drosophila biarmipes 2.0 genome assembly.

Funding

National Institutes of Health: DK015600-18

National Institutes of Health: 1ROIGM082843

National Institutes of Health: U01HB004271

History

Data contact name

Richards, Stephen

Data contact email

stephenr@BCM.EDU

Publisher

Ag Data Commons

Theme

  • Not specified

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

Drosophila; genomics

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Richards, Stephen; Qu, Jiaxin; Jiang, Huaiyang; Batterton, Matthew N.; Blankenburg, Kerstin P.; Gubbala, Sai; Han, Yi; Jayaseelan, Joy C.; Kalra, Divya; Kovar, Christie L.; Lee, Sandra L.; Li, Mingmei; Mathew, Tittu; Munidasa, Mala; Ongeri, Fiona; Perales, Lora; Pu, Ling-Ling; Saada, Nehad; Thornton, Rebecca L.; Warner, Crystal B.; Wu, Yuan-Qing; Zou, Xiaoyan; Scherer, Steven E.; Worley, Kim C.; Muzny, Donna M.; Gibbs, Richard A. (2015). Drosophila biarmipes genome assembly Dbia 2.0. . https://doi.org/10.15482/USDA.ADC/1213221

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    Categories

    Keywords

    i5kDrosophilainsects

    Licence

    U.S. Public Domain

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