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Diaphorina citri genome assembly Diaci 1.9

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posted on 2023-11-30, 07:46 authored by Surya Saha, Wayne B. Hunter, Lukas A. Mueller, Susan Brown
<p>Diaci1.9 is interim version of the <em>Diaphorina citri</em> psyllid genome based on Pacbio long reads. We have generated 36.2Gb of Pacbio long reads from 41 SMRT cells with a coverage of 80X for the 400-450Mb psyllid genome. The canu assembler was used to create an interim assembly with a contig N50 of 115.8kb and 8352 contigs. DIACI v1.9 has 8,352 contigs compared to 161,988 contigs in Diaci1.1 genome assembly. It has a contig N50 of 115.8kb and does not contain any Ns. Please note that this is an interim assembly so we will not be annotating it.</p> <p>This project was funded by the U.S. Department of Agriculture under the DEVELOPING AN INFRASTRUCTURE AND PRODUCT TEST PIPELINE TO DELIVER NOVEL THERAPIES FOR CITRUS GREENING DISEASE grant. </p><div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Diaphorina citri genome assembly Diaci 1.9.</p> <p>File Name: DIACI<em>v1.9.fasta</em>.gz</p><p>Resource Description: This resource is a fasta file of the DIACI_v1.9 genome assembly.</p></li></ul><p></p>

Funding

U.S. Department of Agriculture, 2015-70016-23028

History

Related Materials

  1. 1.
    URL - Is supplemented by Diaphorina citri MCOT sequences
  2. 2.

Data contact name

Saha, Surya

Data contact email

ss2489@cornell.edu

Publisher

Ag Data Commons

Theme

  • Not specified

ISO Topic Category

  • biota

Ag Data Commons Group

  • Insects - i5K

National Agricultural Library Thesaurus terms

genome assembly; Diaphorina citri; Asian citrus psyllid

OMB Bureau Code

  • 005:00 - Department of Agriculture

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Saha, Surya; Hunter, Wayne B.; Mueller, Lukas A.; Brown, Susan (2017). Diaphorina citri genome assembly Diaci 1.9. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1342727

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