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Daucus carota subsp. sativus Transcriptome or Gene expression

dataset

posted on 2024-09-29, 06:45 authored by USDA ARS

We combine Sanger sequencing and ultra-high throughput sequencing to develop an annotated EST/gene sequence database for carrot. This sequence serves as a reference to identify Single Nucleotide Polymorphism (SNP) or insertion/deletion (Indel) variation in breeding germplasm of carrot using Illumina technology. The EST database serves as a reference for other Apiaceae species. The sequences and markers developed will form the basis for the first extensive gene-based genetic maps in this family.

History

Data contact name

BioProject Curation Staff

Data contact email

bioprojecthelp@ncbi.nlm.nih.gov

Publisher

National Center for Biotechnology Information

Temporal Extent Start Date

2011-12-20

Theme

Non-geospatial

ISO Topic Category

biota

National Agricultural Library Thesaurus terms

transcriptome; gene expression

Pending citation

Public Access Level

Public

Accession Number

PRJNA80035

Preferred dataset citation

It is recommended to cite the accession numbers that are assigned to data submissions, e.g. the GenBank, WGS or SRA accession numbers. If individual BioProjects need to be referenced, state that "The data have been deposited with links to BioProject accession number PRJNA80035 in the NCBI BioProject database (https://www.ncbi.nlm.nih.gov/bioproject/)."

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Keywords

Daucus carota subsp. sativus eEukaryotes

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