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Data from: Whole Genome Sequences of the Raspberry and Strawberry Pathogens Phytophthora rubi and P. fragariae

dataset
posted on 2024-02-13, 13:56 authored by Javier F. Tabima, Brent A. Kronmiller, Caroline M. Press, Brett M. Tyler, Inga A. Zasada, Niklaus J. Grünwald

Phytophthora rubi and P. fragariae are two closely related soil-borne oomycete plant pathogens that exhibit strong morphological and physiological similarities but are specialized to infect different hosts of economic importance, namely, raspberry and strawberry. Here, we report the draft genome sequences of these two Phytophthora species as a first step toward understanding the genomic processes underlying plant host adaptation in these pathogens.


Resources in this dataset:

  • Resource Title: Whole Genome Sequences of the Raspberry and Strawberry Pathogens Phytophthora rubi and P. fragariae.

    File Name: Web Page, url: https://doi.org/10.1094/MPMI-04-17-0081-A

    Data links from the paper can be found in the related content section of this record.

Funding

USDA-ARS: 2072-12220-004-00-D

USDA-ARS: 2072-22000-039-00-D

USDA-NIFA: 2010-511001-21649

History

Data contact name

Grünwald, Niklaus J.

Data contact email

nik.grunwald@ars.usda.gov

Publisher

NCBI GenBank

Intended use

Sequencing the genomes of these species will advance our understanding of the genomic mechanisms underlying host adaptation and knowledge of molecular mechanisms of plant pathogenicity.

Temporal Extent Start Date

2017-01-01

Theme

  • Not specified

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"Polygon","coordinates":[[[-531.5625,-82.853382291761],[-531.5625,84.98395580953],[-164.53125,84.98395580953],[-164.53125,-82.853382291761],[-531.5625,-82.853382291761]]]},"type":"Feature","properties":{}}]}

ISO Topic Category

  • biota
  • farming

National Agricultural Library Thesaurus terms

Phytophthora; Oomycetes; plant pathogens; hosts; raspberries; strawberries; genome; genomics

OMB Bureau Code

  • 005:18 - Agricultural Research Service

OMB Program Code

  • 005:040 - National Research

Primary article PubAg Handle

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Tabima, Javier F.; Kronmiller, Brent A.; Press, Caroline M.; Tyler, Brett M.; Zasada, Inga A.; Grünwald, Niklaus J. (2019). Data from: Whole Genome Sequences of the Raspberry and Strawberry Pathogens Phytophthora rubi and P. fragariae. NCBI GenBank.

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    Categories

    Keywords

    P. fragariaePhytophthora rubiSoilpathogensgenome sequencesplantsdata.govARS

    Licence

    U.S. Public Domain

    Exports

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