Ag Data Commons
Browse

Data from: Visualizing Plant Responses: Novel Insights Possible through Affordable Imaging Techniques in the Greenhouse

dataset
posted on 2024-08-14, 20:30 authored by Matthew ConleyMatthew Conley, Reagan Hejl, Desalegn Serba, Clinton F. Williams

Data of image calculation averages, coefficient of variations, and experimental measurements that were presented in the manuscript, Visualizing Plant Responses: Novel Insights Possible through Affordable Imaging Techniques in the Greenhouse, is provided.

Abstract: Global climatic pressures and increased human demands create a modern necessity for efficient and affordable plant phenotyping unencumbered by arduous technical requirements. The analysis and archival of imagery have become easier as modern camera technology and computers are leveraged. This facilitates the detection of vegetation status and changes over time. Using a custom lightbox, an inexpensive camera, and common software, turfgrass pots were photographed in a greenhouse environment over an 8-week experiment period. Subsequent imagery was analyzed for area of cover, color metrics, and sensitivity to image corrections. Findings were compared to active spectral reflectance data and previously reported measurements of visual quality, productivity, and water use. Results indicate that Red Green Blue-based (RGB) imagery with simple controls is sufficient to measure the effects of plant treatments. Notable correlations were observed for corrected imagery, including between a percent yellow color area classification segment (%Y) with human visual quality ratings (VQ) (R = -0.89), the dark green color index (DGCI) with clipping productivity in mg d-1 (mg) (R = 0.61), and an index combination term (COMB2) with water use in mm d-1 (mm) (R = -0.60). The calculation of green cover area (%G) correlated with Normalized Difference Vegetation Index (NDVI) (R = 0.91) and its RED reflectance spectra (R = -0.87). A CIELAB b*/a* chromatic ratio (BA) correlated with Normalized Difference Red-Edge index (NDRE) (R = 0.90), and its Red-Edge (RE) (R = -0.74) reflectance spectra, while a new calculation termed HSVi correlated strongest to the Near-Infrared (NIR) (R = 0.90) reflectance spectra. Additionally, COMB2 significantly differentiated between the treatment effects of date, mowing height, deficit irrigation, and their interactions (p < 0.001). Sensitivity and statistical analysis of typical image file formats and corrections that included JPEG (JPG), TIFF (TIF), geometric lens correction (LC), and color correction (CC) were conducted. Results underscore the need for further research to support image corrections standardization and better connect image data to biological processes. This study demonstrates the potential of consumer-grade photography to capture plant phenotypic traits.

Funding

USDA-ARS: 2020-13210-001-000-D

History

Data contact name

Conley, Matthew

Data contact email

matthew.conley@usda.gov

Publisher

Ag Data Commons

Intended use

Image-based calculated values and experimental measurements from a lysimeter turf grass experiment conducted in the greenhouse environment are presented. A consumer grade camera was used to investigate image file type and image corrections on the ability of image calculations to resolve phenotypic and experimental treatment effects. The data presented served as the basis for reporting in the journal article. Data is offered to provide additional examination and analysis.

Use limitations

None

Temporal Extent Start Date

2023-10-12

Temporal Extent End Date

2023-12-07

Frequency

  • weekly

Theme

  • Non-geospatial

Geographic location - description

Inside two greenhouses at the Arid-Land Agricultural Research Center, Maricopa, Arizona, USA

ISO Topic Category

  • farming

National Agricultural Library Thesaurus terms

plant response; image analysis; greenhouses; humans; phenotype; cameras; vegetation; turf grasses; color; reflectance; normalized difference vegetation index; reflectance spectroscopy; near-infrared spectroscopy; mowing; deficit irrigation; statistical analysis; photography; lysimeters

OMB Bureau Code

  • 005:18 - Agricultural Research Service

OMB Program Code

  • 005:040 - National Research

ARS National Program Number

  • 215

Pending citation

  • Yes

Related material without URL

Visualizing Plant Responses: Novel Insights Possible through Affordable Imaging Techniques in the Greenhouse Matthew M. Conley 1*, Reagan W. Hejl 2, Desalegn D. Serba 3, and Clinton F. Williams 4 MDPI Sensors - Feature Papers in Sensing and Imaging 2024

Public Access Level

  • Public