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Data from: Two new species of Plasmopara affecting wild grapes in the United States

dataset
posted on 2023-12-18, 19:43 authored by Catalina Salgado-Salazar, Marco Thines

Sequence alignments for cox2 and nc LSU rDNA datasets, as well as a reduced cox2 dataset used to determine the variable molecular characters that help to distinguish between the two new Plasmopara species described. The earliest specimen studied was collected in 1884, the most recent in 2021.


Resources in this dataset:

  • Resource Title: Cox2 dataset, aligned.

    File Name: Salgado_Salazar_COX2_dataset_Plasmoparaspnov.fasta


  • Resource Title: Cox2 dataset for barcoding, alignment.

    File Name: Salgado-Salazar_COX2_Plasmoparaspnov_barcodes.fasta


  • Resource Title: rDNA LSU dataset, alignment.

    File Name: Salgado-Salazar_LSU_dataset_Plasmoparaspnov.fasta

Funding

USDA-ARS: 8042-22000-298-00-D

History

Data contact name

Salgado-Salazar, Catalina

Data contact email

catalina.salgado@usda.gov

Publisher

Ag Data Commons

Intended use

Sequence alignments for cox2 and nc LSU rDNA datasets, as well as a reduced cox2 dataset used to determine the variable molecular characters that help distinguishing between the two new species described.

Temporal Extent Start Date

1884-01-01

Temporal Extent End Date

2021-10-01

Theme

  • Not specified

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[-76.930732727051,39.026824948261]},"type":"Feature","properties":{}}]}

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

new species; Plasmopara; grapes; United States; sequence alignment; ribosomal DNA; data collection; downy mildew; Vitaceae; fungal diseases of plants; taxonomy

OMB Bureau Code

  • 005:18 - Agricultural Research Service

OMB Program Code

  • 005:040 - National Research

ARS National Program Number

  • 303

Primary article PubAg Handle

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Salgado-Salazar, Catalina; Thines, Marco (2022). Data from: Two new species of Plasmopara affecting wild grapes in the United States. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1526426