Data from: Tripal EUtils - A Tripal module to increase exchange and reuse of genome assembly metadata
A core component of NCBI’s BioSample metadata are the BioSample “packages” (https://www.ncbi.nlm.nih.gov/biosample/docs/packages/). Data submitters can choose a package, which contain a variety of attribute sets, such as plant- or insect-specific attributes, attribute values as recommended by the MIxS standard, etc. Here, we provide suggested ontology term mappings for attributes from the Invertebrate 1.0 and Plant 1.0 packages (https://www.ncbi.nlm.nih.gov/biosample/docs/packages/Invertebrate.1.0/, https://www.ncbi.nlm.nih.gov/biosample/docs/packages/Plant.1.0/). This dataset corresponds to Table 4 in the corresponding publication in the journal Database.
Resources in this dataset:
Resource Title: Ontology term mapping from: Tripal EUtils - A Tripal module to increase exchange and reuse of genome assembly metadata.
File Name: Table4-ontology-mappings.csv
Resource Description: Proposed property mappings from the NCBI BioSample attribute packages for invertebrates and plants to ontology terms. Where no ontology terms were found, fields are left blank.
Resource Title: Data dictionary for Ontology term mapping.
File Name: data_dictionary.csv
National Science Foundation: 1444573
Data contact namePoelchau, Monica
Data contact email@example.com
PublisherAg Data Commons
Intended useThe ontology term mappings are intended to be used by other databases that provide NCBI BioSample metadata from the Invertebrate 1.0 (https://www.ncbi.nlm.nih.gov/biosample/docs/packages/Invertebrate.1.0/) and Plant 1.0 (https://www.ncbi.nlm.nih.gov/biosample/docs/packages/Plant.1.0/) packages
Use limitationsThese mappings should be deprecated if NCBI publishes their own ontology term mappings for these packages.
- Not specified
ISO Topic Category
Ag Data Commons Group
- Insects - i5K
National Agricultural Library Thesaurus termsgenome assembly; invertebrates
OMB Bureau Code
- 005:00 - Department of Agriculture
Public Access Level