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Data from: The Biology of IncI2 Plasmids Shown by Whole-Plasmid Multi-Locus Sequence Typing
DNA sequences of each allele for 165 loci found in a population of 147 fully sequenced IncI2 plasmids with allelic identifiers.
Data is based on whole-genome sequences in the National Center for Biotechnology Information database as of July, 2017.
Resources in this dataset:
- Resource Title: IncI2 locus alleles database.File Name: IncI2_locus_alleles.fasResource Description: defining DNA sequences for locus alleles: loci with just one allele have long name; any locus with more than one allele have four or five-letter code followed by underscore (_) and one or two digit number that is the locus ID.
Funding
USDA-ARS: 6040-41420-005-00-D
History
Data contact name
Meinersmann, RickData contact email
rick.meinersmann@ars.usda.govPublisher
Ag Data CommonsIntended use
Data sequences are for assigning allele identifiers for doing multi-locus sequence typing of IncI2 plasmids for population genetics studies. A plasmid sequence is mapped against the database to retrieve a list of alleles that are present.Theme
- Not specified
ISO Topic Category
- biota
National Agricultural Library Thesaurus terms
DNA; nucleotide sequences; alleles; loci; plasmids; multilocus sequence typing; Enterobacteriaceae; population genetics; antibiotic resistanceOMB Bureau Code
- 005:18 - Agricultural Research Service
OMB Program Code
- 005:040 - National Research
ARS National Program Number
- 108
Primary article PubAg Handle
Pending citation
- No
Public Access Level
- Public