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Data from: Metagenomes and Metagenome-Assembled Genomes from Ex Vivo Fecal Incubations of Six Unique Donors

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posted on 2024-02-16, 14:45 authored by Adrienne NarroweAdrienne Narrowe, LinShu Liu, Johanna Lemons, Jenni Firrman, Karley K. Mahalak

This is a dataset consisting of donor-specific collections of 78 metagenomes (13 / donor) and 143 metagenome-assembled genomes (MAGs) representing the gut microbiomes of six healthy adult human donors. Raw sequencing data and MAG sequence data will be available in NCBI under BioProject accession PRJNA961974 (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA961974). Spreadsheets attached to this dataset include individual accession numbers and sequencing depth for the raw data; and assembly and NCBI accession numbers, binning information, quality metrics, and taxonomic assignments for the MAGs.

Resources in this dataset:

  • Resource Title: Metagenome assembled genome (MAG) information File Name: MAGs_information_table.csv
  • Resource Title: Metagenome sample information File Name: Metagenomes_information_table.csv
  • Resource Title: Metagenome metadata table File Name: Metagenome_metadata_table.xlsx
  • Resource Title: MAG metadata table File Name: MAG_metadata_table.xlsx

Funding

Agricultural Research Service, 8072-41000-108-000D

History

Data contact name

Narrowe, Adrienne

Data contact email

adrienne.narrowe@usda.gov

Publisher

Ag Data Commons

Temporal Extent Start Date

2022-05-01

Theme

  • Not specified

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[-75.171203613281,39.959999661031]},"type":"Feature","properties":{}},{"geometry":{"type":"Point","coordinates":[3.7236785888672,51.052560082502]},"type":"Feature","properties":{}}]}

Geographic location - description

Ghent, Belgium and Philadelphia, PA, USA

ISO Topic Category

  • health

National Agricultural Library Thesaurus terms

metagenomics; genome; data collection; digestive system; microbiome; adults; humans; intestinal microorganisms

OMB Bureau Code

  • 005:18 - Agricultural Research Service

OMB Program Code

  • 005:040 - National Research

ARS National Program Number

  • 306

Primary article PubAg Handle

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Narrowe, Adrienne; Liu, LinShu; Lemons, Johanna; Firrman, Jenni; Mahalak, Karley K. (2023). Data from: Metagenomes and Metagenome-Assembled Genomes from Ex Vivo Fecal Incubations of Six Unique Donors. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1529438

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    Categories

    Keywords

    metagenomicsgut microbiomeNP306metagenome assembled genomesdata.govARS

    Licence

    U.S. Public Domain

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