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Data from: Landscape-scale Epidemiological Dynamics of SARS-CoV-2 in White-tailed Deer

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posted on 2024-01-23, 22:18 authored by JOSHUA HEWITTJOSHUA HEWITT, Grete Wilson-Henjum, Derek Collins, Timothy Linder, Julianna Lenoch, Jonathon Heale, Christopher Quintanal, Robert Pleszewski, Dillon McBride, Andrew S. Bowman, Jeffrey C. Chandler, Susan A. Shriner, Sarah N. Bevins, Dennis J. Kohler, Richard B. Chipman, Allen Gosser, David BergmanDavid Bergman, Thomas J. DeLiberto, Kim M. Pepin
The zip file contains posterior samples and fitted surfaces that describe SARS-CoV-2 prevalence estimates for North American white -tailed deer (Odocoileus virginianus).  Each output file in the zip file contains output for one unique combination of animal sex, age class, harvest type, swab type, and state. The zip file's README file contains additional descriptions about the format of fitted surfaces.

The "SupplementaryData - sample sizes.csv" file contains county-level sample sizes for demographic, age, sex, and sample collection data used in this study.

The manuscript to which this data repository is a supplement describes data collection, processing, and analysis steps.


Funding

USDA American Rescue Plan

NIAID CENTERS OF EXCELLENCE FOR INFLUENZA RESEARCH AND RESPONSE: contract 75N93021C00016

History

Data contact name

Hewitt, Joshua M.

Data contact email

Joshua.hewitt2@usda.gov

Publisher

Ag Data Commons

Intended use

The posterior summaries of fitted surfaces can be used to explore and visualize model output in detail. The posterior samples can be used to compute point estimates and uncertainty for additional posterior quantities (i.e., maxima, etc.), or to simulate synthetic datasets.

Use limitations

Data represent model output. Data are primarily provided at the county level. Aggregation to state or regional scales requires reweighing model output. The manuscript to which this data repository is a supplement describes additional assumptions and limitations about the model and analysis. The sample size csv file shows aggregated sample sizes per county for different groupings. For example, they do not provide granular detail about how many oral swabs came from hunter harvested females.

Temporal Extent Start Date

2021-10-17

Temporal Extent End Date

2022-10-02

Frequency

  • weekly

Theme

  • Not specified

Geographic location - description

Counties in the Conterminous United States

ISO Topic Category

  • environment

National Agricultural Library Thesaurus terms

Severe acute respiratory syndrome coronavirus 2; Odocoileus virginianus; deer; data collection; monitoring; disease outbreaks; ecology; epidemiology; emerging diseases; animal disease models; United States

OMB Bureau Code

  • 005:32 - Animal and Plant Health Inspection Service

Pending citation

  • Yes

Public Access Level

  • Public

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    Categories

    Keywords

    Disease ecologySurveillance dataOutbreak estimation

    Licence

    CC BY 4.0

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