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Data from: Haplotype-resolved chromosome-level genome assembly of creeping bentgrass, <i>Agrostis stolonifera</i>

Version 2 2025-11-24, 22:32
Version 1 2025-09-29, 18:17
dataset
posted on 2025-11-24, 22:32 authored by MATTHEW ROBBINSMATTHEW ROBBINS, Sunchung Park, Bradley BushmanBradley Bushman, Scott Warnke, Jinyoung Y. Barnaby
<p dir="ltr">Genome sequence with gene annotation files of the creeping bentgrass cultivar 'Declaration' genome assembly reported in the manuscript "Haplotype-resolved chromosome-level genome assembly of creeping bentgrass,<i> </i><i>Agrostis stolonifera</i>". Both haplotype assemblies from the manuscript are combined. The genome sequence is the 'creep_bentv1.0_hap1_hap2.fasta' file which contains both haplotype assemblies from the manuscript combined. The haplotypes are also combined in files for gene annotation (creep_bentv1.0_hap1_hap2.gff), transcript sequences (creep_bentv1.0_hap1_hap2_cds.fasta), protein sequences (creep_bentv1.0_hap1_hap2_pep.fasta), and the transposable element annotation (creep_bentv1.0_hap1_hap2_TE_anno.gff). For usability, additional files are separated by haplotype for the gene annotation (creep_bentv1.0_hap1.gff and creep_bentv1.0_hap2.gff), transcript sequences (creep_bentv1.0_hap1_cds.fasta and creep_bentv1.0_hap2_cds.fasta), and protein sequences (creep_bentv1.0_hap1_pep.fasta and creep_bentv1.0_hap2_pep.fasta).</p>

Funding

USDA-ARS: 2080-21500-002-000D

USDA-ARS: 8020-21500-002-000D

USDA-ARS: 0201-88888-003-000D

USDA-ARS: 0201-88888-002-000D

History

Data contact name

Robbins, Matthew D.

Data contact email

matthew.robbins@usda.gov

Publisher

Ag Data Commons

Temporal Extent Start Date

2021-02-08

Theme

  • Non-geospatial

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

genome assembly; Agrostis stolonifera; polyploidy; transposons; genes; cultivars; haplotypes; messenger RNA; amino acid sequences

OMB Bureau Code

  • 005:18 - Agricultural Research Service

OMB Program Code

  • 005:040 - National Research

ARS National Program Number

  • 215

ARIS Log Number

428847

Pending citation

  • Yes

Related material without URL

Robbins MD, Park S, Bushman BS, Warnke S, Barnaby JY. Haplotype-resolved chromosome-level genome assembly of creeping bentgrass, Agrostis stolonifera. Scientific Data (in review)

Public Access Level

  • Public

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