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Data from: Genomic regions associated with Mycoplasma ovipneumoniae presence in nasal secretions of domestic sheep

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posted on 2023-12-18, 18:43 authored by Michelle R. Mousel, Stephen N. White, Maria K. Herndon, David R. Herndon, J. Bret Taylor, Gabrielle M. Becker, Brenda M. Murdoch

Genotypes of significant SNPs in all breed and individual breed analysis with detected Mycoplasma ovipneumoniae DNA copy number and log10 M. ovipneumoniae DNA copy number. SNP is denoted in the column headers with its rs number and the first 7 SNP are from the all breed analysis, the following 9 SNP from the Rambouillet analysis, the following 3 from the Polypay analysis, and the final 9 from the Suffolk analysis.


Resources in this dataset:

  • Resource Title: Data from: Genomic regions associated with Mycoplasma ovipneumoniae presence in nasal secretions of domestic sheep.

    File Name: PLoS ONE Data.xlsx

Funding

USDA-ARS: 2090-32000-036-00D

History

Data contact name

Mousel, Michelle

Data contact email

michelle.mousel@usda.gov

Publisher

Ag Data Commons

Intended use

This data set provides raw information from a genome wide association study which identified genomic associations with Mycoplasma ovipneumoniae detection in domestic sheep. This can be used to verify results of the manuscript submitted to a peer reviewed journal.

Use limitations

There were a limited number of sheep and breeds in this study and the results may not be representative of all sheep.

Temporal Extent Start Date

2015-01-01

Temporal Extent End Date

2018-12-31

Theme

  • Not specified

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"Polygon","coordinates":[[[-121.640625,40.509344487962],[-121.640625,48.512722992001],[-110.56640625,48.512722992001],[-110.56640625,40.509344487962],[-121.640625,40.509344487962]]]},"type":"Feature","properties":{}}]}

ISO Topic Category

  • farming
  • health

National Agricultural Library Thesaurus terms

genomics; Mycoplasma ovipneumoniae; nose; secretion; sheep; genotype; single nucleotide polymorphism; DNA; Rambouillet; Polypay; detection

OMB Bureau Code

  • 005:18 - Agricultural Research Service

OMB Program Code

  • 005:040 - National Research

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Mousel, Michelle R.; White, Stephen N.; Herndon, Maria K.; Herndon, David R.; Taylor, J. Bret; Becker, Gabrielle M.; Murdoch, Brenda M. (2021). Data from: Genomic regions associated with Mycoplasma ovipneumoniae presence in nasal secretions of domestic sheep. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1520927

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    Categories

    Keywords

    Domestic sheepMycoplasma ovipneumoniae detectionGWASdata.govARS

    Licence

    U.S. Public Domain

    Exports

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