Ag Data Commons
Browse

Data from: Genome resources for seven fungal isolates that cause turfgrass dollar spot disease, including Clarireedia jacksonii and C. monteithiana

dataset
posted on 2024-02-15, 20:38 authored by Jo Anne Crouch, Lisa Beirn, Ignazio Carbone, Bruce B. Clarke, James P. Kerns, Martha Malapi-Wight, Lane P. Tredway

Ascomycete fungi in the genus Clarireedia are responsible for dollar spot, one of the most destructive and costly diseases affecting turfgrasses worldwide. Almost all grasses grown as turf are susceptible to dollar spot, including many high value grass species commonly used for golf courses. This Ag Data Commons dataset provides the genome sequences for seven isolates of Clarireedia fungi that cause dollar spot disease, including sequences of the two most widespread species, C. jacksonii and C. monteithiana. These data are freely available for research purposes.


Resources in this dataset:

  • Resource Title: Clarireedia monteithiana DRR9 EST sequences.

    File Name: DRR9_ESTcontigs.fa.txt

    Resource Description: Clarireedia monteithiana DRR9 EST sequences


  • Resource Title: Clarireedia jacksonii MB01 ESTs.

    File Name: MB01_ESTcontigs.fa.txt

    Resource Description: Clarireedia jacksonii MB01 ESTs


  • Resource Title: Clarireedia jacksonii MB01 EST sequences, from Orshinky et al. .

    File Name: NCBI_Orshinsky_Sclerotinia_homoeocarpaESTsequences.fasta.zip

    Resource Description: Clarireedia jacksonii MB01 EST sequences, from: Orshinsky AM, Hu J, Opiyo SO, Reddyvari-Channarayappa V, Mitchell TK, Boehm MJ (2012) RNA-Seq Analysis of the Sclerotinia homoeocarpa – Creeping Bentgrass Pathosystem. PLoS ONE 7(8): e41150. https://doi.org/10.1371/journal.pone.0041150


  • Resource Title: Genome assembly, Clarireedia sp. CPB17.

    File Name: CPB17final.fasta.txt


  • Resource Title: Genome assembly, Clarireedia monteithiana DRR9.

    File Name: DRR9final.fasta.txt


  • Resource Title: Genome assembly, Clarireedia jacksonii LWC10.

    File Name: LWC10final.fasta.txt


  • Resource Title: Genome assembly, Clarireedia jacksonii MB01.

    File Name: MB01final.fasta.txt


  • Resource Title: Genome assembly, Clarireedia monteithiana RB19.

    File Name: RB19final.fasta.txt


  • Resource Title: Genome assembly, Clarireedia sp. SE16F4.

    File Name: SE16F4final.fasta.txt


  • Resource Title: Genome assembly, Clarireedia jacksonii SH44.

    File Name: SH44final.fasta.txt


  • Resource Title: Predicted proteins, Clarireedia sp. CPB17.

    File Name: CPB17.fa.txt


  • Resource Title: Predicted proteins, Clarireedia monteithiana DRR9.

    File Name: DRR9.fa.txt


  • Resource Title: Predicted proteins, Clarireedia jacksonii LWC10.

    File Name: LWC10.fa.txt


  • Resource Title: Predicted proteins, Clarireedia jacksonii MB01.

    File Name: MB01.fa.txt


  • Resource Title: Predicted proteins Clarireedia sp. SE16F4.

    File Name: SE16F4.fa.txt


  • Resource Title: Predicted proteins, Clarireedia jacksonii SH44.

    File Name: SH44.fa.txt


  • Resource Title: Predicted proteins, Clarireedia jacksonii HRS10.

    File Name: HRS10.fa_.txt

Funding

USDA-ARS: 8042-22000-298-00D

History

Data contact name

Crouch, Jo Anne

Data contact email

joanne.crouch@usda.gov

Publisher

Ag Data Commons

Intended use

These data are freely available for research purposes.

Temporal Extent Start Date

2017-04-01

Temporal Extent End Date

2020-06-30

Theme

  • Not specified

Geographic Coverage

{"type":"FeatureCollection","features":[{"geometry":{"type":"Point","coordinates":[-76.925491690636,39.026887979474]},"type":"Feature","properties":{}}]}

Geographic location - description

worldwide

ISO Topic Category

  • biota

National Agricultural Library Thesaurus terms

Ascomycota; fungi; turf grasses; lawns and turf; golf courses; data collection; nucleotide sequences; genome; plant pathogenic fungi; plant pathogens; Agrostis stolonifera; Cynodon dactylon; Festuca rubra; Paspalum vaginatum; Rutstroemiaceae; Sclerotinia homoeocarpa

OMB Bureau Code

  • 005:18 - Agricultural Research Service

OMB Program Code

  • 005:040 - National Research

ARS National Program Number

  • 303

Primary article PubAg Handle

Pending citation

  • No

Public Access Level

  • Public

Preferred dataset citation

Crouch, Jo Anne; Beirn, Lisa; Carbone, Ignazio; Clarke, Bruce B.; Kerns, James P.; Malapi-Wight, Martha; Tredway, Lane P. (2020). Data from: Genome resources for seven fungal isolates that cause turfgrass dollar spot disease, including Clarireedia jacksonii and C. monteithiana. Ag Data Commons. https://doi.org/10.15482/USDA.ADC/1519041